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The map label for this gene is 17545801

Identifier: 17545801

GI number: 17545801

Start: 1140010

End: 1141194

Strand: Direct

Name: 17545801

Synonym: RSc1082

Alternate gene names: NA

Gene position: 1140010-1141194 (Clockwise)

Preceding gene: 17545800

Following gene: 17545802

Centisome position: 30.68

GC content: 66.33

Gene sequence:

>1185_bases
ATGAACGACAAGCGAACCGTCTTTGCCTTCAACCCGCTCTGCGCCTGCATTGCGCTGCTGGGCGCGGGCGTATCGATGCA
GGCCGCGGCGCAATCGTCGGTCACGCTGTACGGCGTCGTCGATACGGCATTCGCCTATTCGAGCAACCAGGGCGGCCATT
CGAACACCTACATGAGCCAGGGCAACCTGCTGGCCAGCAAGTTCGGGCTGTCCGGCACCGAGGACCTGGGCGGCGGCACC
CAGGCGCTGTTCCGGCTGGAGAGCGGCTTCAACTCCGCCACGGGCGCACAGGCCGCGGCGGGCTATCTGTTCAACCGGCT
GGCGTTCGTCGGCCTCAGCGACAAGACTTACGGCGCGCTGACCCTCGGCCGCCAGTACACGCCGTACTTCCAGTACGTGG
CGGCCCTGGGCCCGACCAACGTGCTGACCGGGGCCACCGGCGCGCACCCGGGCGATGTGGATGCGCTCGACACGACCCTG
CGCTTCAACAACTCCGTCACCTACACGCTGCCCGTGATCGGCGGCCTGCAGGCGGGGGTGCAGTACGGCATGGGCGAGCA
GCCGGGCAGCATCTCGGGCGGCAGCAGCTTCAGCGCGGCGCTGCGCTACGACTACCAGGCCTTTGCCTGGTCCGCCGGCT
ATATCCACCTGAAGAACATCCCGACCAGCAATTCGGTCGGCACCTTCGCCAACAACTCGCCCGTCAACAGCGGCTATGCG
TCGGCGGACAGCGCCCAGCTGATCGCCACCGCGGCGCGCTATACGTTCGGCAAGCTGATGGTCGGCCTGAACTATTCGAA
CGTCCAGTACAAGCCGGGTGCGGGATCGCTGTTCACGCAAGCCGCGATGTTCAACAGCTATGGCCTGATCTCCACCTATG
CGCTGACGCCGGCGATCACCGTGGCGGCCGGCTACAGCTATACCGCCGAGAAGGCCCGCAACGGCATCAGCTCGCCGGCG
CGCTACCACCAGTTCTCGATGGAGCAGACCTACGCGCTGTCCAAGCGCACCGCGTTCTACGCGCTCGAGGCGTACCAGAA
GGCCAGCGGCAAGACCTTGCGCACGGTGGGCGGCGTCAGCACCATCGTCGATACCGTGGCTTCGGTGGGGGACTCGCAGA
ACGGCACGCCGTCGAGCACCGGTCACCAGTTCGTGGGCATGGTGGGTATCCGCCATCTGTTCTGA

Upstream 100 bases:

>100_bases
CGAGCAGGCGGTGGCGGGCGGCTGGCGCCGGTTCACGCTGCAGTTGCCGCGCTGACTGATGCCGCATCGAACACAACCTA
GAACAATCCGGAGGAGAACC

Downstream 100 bases:

>100_bases
GCCGGCTGCGATGCTGGAGGCGCGGCGGCTTCAATGCGGGTTGAGCCGATGAATGCATCCCTTTCCGGTGCCGCGGAACG
CTCCGCGCCGGCCGGCAGAT

Product: porin transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MNDKRTVFAFNPLCACIALLGAGVSMQAAAQSSVTLYGVVDTAFAYSSNQGGHSNTYMSQGNLLASKFGLSGTEDLGGGT
QALFRLESGFNSATGAQAAAGYLFNRLAFVGLSDKTYGALTLGRQYTPYFQYVAALGPTNVLTGATGAHPGDVDALDTTL
RFNNSVTYTLPVIGGLQAGVQYGMGEQPGSISGGSSFSAALRYDYQAFAWSAGYIHLKNIPTSNSVGTFANNSPVNSGYA
SADSAQLIATAARYTFGKLMVGLNYSNVQYKPGAGSLFTQAAMFNSYGLISTYALTPAITVAAGYSYTAEKARNGISSPA
RYHQFSMEQTYALSKRTAFYALEAYQKASGKTLRTVGGVSTIVDTVASVGDSQNGTPSSTGHQFVGMVGIRHLF

Sequences:

>Translated_394_residues
MNDKRTVFAFNPLCACIALLGAGVSMQAAAQSSVTLYGVVDTAFAYSSNQGGHSNTYMSQGNLLASKFGLSGTEDLGGGT
QALFRLESGFNSATGAQAAAGYLFNRLAFVGLSDKTYGALTLGRQYTPYFQYVAALGPTNVLTGATGAHPGDVDALDTTL
RFNNSVTYTLPVIGGLQAGVQYGMGEQPGSISGGSSFSAALRYDYQAFAWSAGYIHLKNIPTSNSVGTFANNSPVNSGYA
SADSAQLIATAARYTFGKLMVGLNYSNVQYKPGAGSLFTQAAMFNSYGLISTYALTPAITVAAGYSYTAEKARNGISSPA
RYHQFSMEQTYALSKRTAFYALEAYQKASGKTLRTVGGVSTIVDTVASVGDSQNGTPSSTGHQFVGMVGIRHLF
>Mature_394_residues
MNDKRTVFAFNPLCACIALLGAGVSMQAAAQSSVTLYGVVDTAFAYSSNQGGHSNTYMSQGNLLASKFGLSGTEDLGGGT
QALFRLESGFNSATGAQAAAGYLFNRLAFVGLSDKTYGALTLGRQYTPYFQYVAALGPTNVLTGATGAHPGDVDALDTTL
RFNNSVTYTLPVIGGLQAGVQYGMGEQPGSISGGSSFSAALRYDYQAFAWSAGYIHLKNIPTSNSVGTFANNSPVNSGYA
SADSAQLIATAARYTFGKLMVGLNYSNVQYKPGAGSLFTQAAMFNSYGLISTYALTPAITVAAGYSYTAEKARNGISSPA
RYHQFSMEQTYALSKRTAFYALEAYQKASGKTLRTVGGVSTIVDTVASVGDSQNGTPSSTGHQFVGMVGIRHLF

Specific function: Forms anion selective channels [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41169; Mature: 41169

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDKRTVFAFNPLCACIALLGAGVSMQAAAQSSVTLYGVVDTAFAYSSNQGGHSNTYMSQ
CCCCEEEEEECHHHHHHHHHCCCCCEEHHCCCCEEEEEEEHHHHEECCCCCCCCCCEECC
GNLLASKFGLSGTEDLGGGTQALFRLESGFNSATGAQAAAGYLFNRLAFVGLSDKTYGAL
CCEEEHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEECCCCCCEEE
TLGRQYTPYFQYVAALGPTNVLTGATGAHPGDVDALDTTLRFNNSVTYTLPVIGGLQAGV
EECCCCCHHHHHHHHCCCCHHCCCCCCCCCCCCCHHEEEEEECCEEEEEEECCCCHHHHH
QYGMGEQPGSISGGSSFSAALRYDYQAFAWSAGYIHLKNIPTSNSVGTFANNSPVNSGYA
HCCCCCCCCCCCCCCCCCHHEEECCHHEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCC
SADSAQLIATAARYTFGKLMVGLNYSNVQYKPGAGSLFTQAAMFNSYGLISTYALTPAIT
CCCCHHHHHHHHHHHHHHEEEEECCCCEEECCCCCHHHHHHHHHCCCCCHHHHHHCCEEE
VAAGYSYTAEKARNGISSPARYHQFSMEQTYALSKRTAFYALEAYQKASGKTLRTVGGVS
EECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHCCHH
TIVDTVASVGDSQNGTPSSTGHQFVGMVGIRHLF
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNDKRTVFAFNPLCACIALLGAGVSMQAAAQSSVTLYGVVDTAFAYSSNQGGHSNTYMSQ
CCCCEEEEEECHHHHHHHHHCCCCCEEHHCCCCEEEEEEEHHHHEECCCCCCCCCCEECC
GNLLASKFGLSGTEDLGGGTQALFRLESGFNSATGAQAAAGYLFNRLAFVGLSDKTYGAL
CCEEEHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEECCCCCCEEE
TLGRQYTPYFQYVAALGPTNVLTGATGAHPGDVDALDTTLRFNNSVTYTLPVIGGLQAGV
EECCCCCHHHHHHHHCCCCHHCCCCCCCCCCCCCHHEEEEEECCEEEEEEECCCCHHHHH
QYGMGEQPGSISGGSSFSAALRYDYQAFAWSAGYIHLKNIPTSNSVGTFANNSPVNSGYA
HCCCCCCCCCCCCCCCCCHHEEECCHHEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCC
SADSAQLIATAARYTFGKLMVGLNYSNVQYKPGAGSLFTQAAMFNSYGLISTYALTPAIT
CCCCHHHHHHHHHHHHHHEEEEECCCCEEECCCCCHHHHHHHHHCCCCCHHHHHHCCEEE
VAAGYSYTAEKARNGISSPARYHQFSMEQTYALSKRTAFYALEAYQKASGKTLRTVGGVS
EECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHCCHH
TIVDTVASVGDSQNGTPSSTGHQFVGMVGIRHLF
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]