| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17545598
Identifier: 17545598
GI number: 17545598
Start: 915365
End: 917209
Strand: Direct
Name: 17545598
Synonym: RSc0879
Alternate gene names: NA
Gene position: 915365-917209 (Clockwise)
Preceding gene: 17545597
Following gene: 17545599
Centisome position: 24.63
GC content: 69.59
Gene sequence:
>1845_bases GTGACCGTCGATCTCGAATTCCGGGGGGCGTGGAAGCCTCCGAACGGCGGCAGTGCCGATCTCGACTTCGGGGACACGCG GCAGGCGGTCCCCGAGGCGGCCAGTGCCACGGTGCGCGTCCGGCTGGGTCCGCCCAAGGCGCGCATCCGCGCGGCCTATG ACAACCAGGTGAGCCGCAAGCTCGAGGGCGGGGGTCAGGTGCCGTGGCAACGCGCGCAGCGCCAGGGCGCCGACCTGCAG GGCGGCTGGGACGACAGTGCGCGCGCGCGGAGCGCTGCGGCGATGCCTTGGCAACCGACCATGACGCTGGCCGGCACAGT CCAGTCGGCCGGCGGCGACAACCAGCGCGCCCGCAGCACTAGCCGCGTGCGGTGGCAAGGCGCAGCGCCCGCGCCATCCT CAACGGCAGAGCGCATCAATCAGCTGGTACCGCAGCATGGCGGGCTCGGCTTGCTGTGGGGCGAGGGCGCGGCCTTGTCC GGCACCGTGCTCAGTCCGTTCGTCTGGCTGGTGCCGTGTTCGCGGGGCCAGTCGCAGGGATGGCAACTCGCCGTGCCGCT TGCACTACGCGAGGCATTCGGGTTCTCACCCGGACGCTGGCAATCGGGCCGGTGGTCATTGCCGTGGGAGGTCGGCCGTC AGCCGCGCCCAGGCGAGTCGCACCTGCCGGTCGACCCTCCCGTGGTCGAGCCGGTGCCCAGGTATCACCCCGATCTCGAC TTCATCTGCCATGCGACCCGCCAGGGCCTCGCGTGGCGCCCCGTGCTGTGGCTCGACTTCGGCGCCCACCCGTGCGGGCA GCCAAACGCCGATGTCTTCAGCGTCCCCATCCTCAAAGTCTATTTTGTGAGCAACTCCGTTGATGTCGTGCGCCTGCCCG GCCGCGAGCCTATTCCCGTCAAGAGCGTTCGGCTCTCCATCGACGAGGGTTCGTGGGCGTGGGGACTGTCGGCCAGCCTG CCGTACGCGGCACTGGAAATGGTCGAGCCCACCGCATCCGGCCCGGTAGAGATCGAGATCACGATCAACGGCGTGACCTG GGTGATGCTGGTCGAGGGGTTCGACGTGCGGCGCGAGTTCGGCCAGGCGAGCCTCGACATCCGGGGGCGCTCGACTGCGG CGTACTTGGCCGAACCCTATGCGCCAAAGCGGTCCTTCGTGCCGGCGGCACCTTTCACCGCACGCCAACTGGCCGAGCAG GAGCTGACGCGTGCGGGGCTGGTGACCGGTTTCACGCTCGATTGGCGGCTGCCGGACTGGCTGGTGCCGGAGGGCAACTG GGGTTACCAGTCCCTGAGCCCGATGGGGGTGATCGGCCGCATCGCTGAAGCGGCGGGCGGCTACGTCAATGCCCATCCGC GACTGCGGACGCTGGTGGCCAAGTCCCGGTATCCGATGCTGCCCTGGAACTGGGCAACCGAGGTTCCCGACCGGACGCTG CCCATCGACGTGGTCAAGACGTTGAATCTGCGCTGGCAAGAAAAGCCCACCTTCAACGCGGTGTACGTCTGCGGCGAGCG CCAGGGCGTCACCGGGCACGTGGTCCGCGCCGGTACGGCTGGCGATCTGGTCGCGCCGACGGTGGTCGATGCGCTGATCA CCCACGCCGATGTTGCCCGCGAGCGGGGTCGCTCGATCCTGGCCGACGTCGGCCGGCAGGCGGTCGTCACGCTGGAACTG CCGATGCTCAGTTCGCTTGGCCTGCTCGATCCGGGTCTGCTGCTCGCCGTCGGCGAGGGCGGGGCGAACTGGCGCGGCCT GGTGCGTGCCACCAGCATCGCCGCCGAGTGGAACGAATCCCTGACCGTGCGCCAGACCATCGAGGTCGAGCGCCACTACC TGTAG
Upstream 100 bases:
>100_bases GGACTGCCGGACAGCGGGGCGGAGGTCGAACTGCCGAAGCTGCAGGTCTTCGCCGGCGGCGCGGTCAACGTGGAACTGGC CGAACTGATCGAATAGCGCC
Downstream 100 bases:
>100_bases GAGCCCGCAATGCCCAACCTGTGGCGGCAGTTCGAGGACTTGCTGCCGGATGCCCCGTTGCTGGTCGGCACGGTGGTGAC CCGTCACGACGATGGCACGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 614; Mature: 613
Protein sequence:
>614_residues MTVDLEFRGAWKPPNGGSADLDFGDTRQAVPEAASATVRVRLGPPKARIRAAYDNQVSRKLEGGGQVPWQRAQRQGADLQ GGWDDSARARSAAAMPWQPTMTLAGTVQSAGGDNQRARSTSRVRWQGAAPAPSSTAERINQLVPQHGGLGLLWGEGAALS GTVLSPFVWLVPCSRGQSQGWQLAVPLALREAFGFSPGRWQSGRWSLPWEVGRQPRPGESHLPVDPPVVEPVPRYHPDLD FICHATRQGLAWRPVLWLDFGAHPCGQPNADVFSVPILKVYFVSNSVDVVRLPGREPIPVKSVRLSIDEGSWAWGLSASL PYAALEMVEPTASGPVEIEITINGVTWVMLVEGFDVRREFGQASLDIRGRSTAAYLAEPYAPKRSFVPAAPFTARQLAEQ ELTRAGLVTGFTLDWRLPDWLVPEGNWGYQSLSPMGVIGRIAEAAGGYVNAHPRLRTLVAKSRYPMLPWNWATEVPDRTL PIDVVKTLNLRWQEKPTFNAVYVCGERQGVTGHVVRAGTAGDLVAPTVVDALITHADVARERGRSILADVGRQAVVTLEL PMLSSLGLLDPGLLLAVGEGGANWRGLVRATSIAAEWNESLTVRQTIEVERHYL
Sequences:
>Translated_614_residues MTVDLEFRGAWKPPNGGSADLDFGDTRQAVPEAASATVRVRLGPPKARIRAAYDNQVSRKLEGGGQVPWQRAQRQGADLQ GGWDDSARARSAAAMPWQPTMTLAGTVQSAGGDNQRARSTSRVRWQGAAPAPSSTAERINQLVPQHGGLGLLWGEGAALS GTVLSPFVWLVPCSRGQSQGWQLAVPLALREAFGFSPGRWQSGRWSLPWEVGRQPRPGESHLPVDPPVVEPVPRYHPDLD FICHATRQGLAWRPVLWLDFGAHPCGQPNADVFSVPILKVYFVSNSVDVVRLPGREPIPVKSVRLSIDEGSWAWGLSASL PYAALEMVEPTASGPVEIEITINGVTWVMLVEGFDVRREFGQASLDIRGRSTAAYLAEPYAPKRSFVPAAPFTARQLAEQ ELTRAGLVTGFTLDWRLPDWLVPEGNWGYQSLSPMGVIGRIAEAAGGYVNAHPRLRTLVAKSRYPMLPWNWATEVPDRTL PIDVVKTLNLRWQEKPTFNAVYVCGERQGVTGHVVRAGTAGDLVAPTVVDALITHADVARERGRSILADVGRQAVVTLEL PMLSSLGLLDPGLLLAVGEGGANWRGLVRATSIAAEWNESLTVRQTIEVERHYL >Mature_613_residues TVDLEFRGAWKPPNGGSADLDFGDTRQAVPEAASATVRVRLGPPKARIRAAYDNQVSRKLEGGGQVPWQRAQRQGADLQG GWDDSARARSAAAMPWQPTMTLAGTVQSAGGDNQRARSTSRVRWQGAAPAPSSTAERINQLVPQHGGLGLLWGEGAALSG TVLSPFVWLVPCSRGQSQGWQLAVPLALREAFGFSPGRWQSGRWSLPWEVGRQPRPGESHLPVDPPVVEPVPRYHPDLDF ICHATRQGLAWRPVLWLDFGAHPCGQPNADVFSVPILKVYFVSNSVDVVRLPGREPIPVKSVRLSIDEGSWAWGLSASLP YAALEMVEPTASGPVEIEITINGVTWVMLVEGFDVRREFGQASLDIRGRSTAAYLAEPYAPKRSFVPAAPFTARQLAEQE LTRAGLVTGFTLDWRLPDWLVPEGNWGYQSLSPMGVIGRIAEAAGGYVNAHPRLRTLVAKSRYPMLPWNWATEVPDRTLP IDVVKTLNLRWQEKPTFNAVYVCGERQGVTGHVVRAGTAGDLVAPTVVDALITHADVARERGRSILADVGRQAVVTLELP MLSSLGLLDPGLLLAVGEGGANWRGLVRATSIAAEWNESLTVRQTIEVERHYL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66820; Mature: 66688
Theoretical pI: Translated: 8.32; Mature: 8.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVDLEFRGAWKPPNGGSADLDFGDTRQAVPEAASATVRVRLGPPKARIRAAYDNQVSRK CEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCHHHEEEHHHHHHHHH LEGGGQVPWQRAQRQGADLQGGWDDSARARSAAAMPWQPTMTLAGTVQSAGGDNQRARST HCCCCCCCHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHCCC SRVRWQGAAPAPSSTAERINQLVPQHGGLGLLWGEGAALSGTVLSPFVWLVPCSRGQSQG CCEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHCCEEEEEECCCCCCCC WQLAVPLALREAFGFSPGRWQSGRWSLPWEVGRQPRPGESHLPVDPPVVEPVPRYHPDLD CEEEEHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH FICHATRQGLAWRPVLWLDFGAHPCGQPNADVFSVPILKVYFVSNSVDVVRLPGREPIPV HHHHHHHCCCEECCEEEEECCCCCCCCCCCCEEEECEEEEEEECCCCEEEECCCCCCCCE KSVRLSIDEGSWAWGLSASLPYAALEMVEPTASGPVEIEITINGVTWVMLVEGFDVRREF EEEEEEECCCCEEECCCCCCCHHHHHHHCCCCCCCEEEEEEECCEEEEEEECCCHHHHHH GQASLDIRGRSTAAYLAEPYAPKRSFVPAAPFTARQLAEQELTRAGLVTGFTLDWRLPDW CCCEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEEECCCCCE LVPEGNWGYQSLSPMGVIGRIAEAAGGYVNAHPRLRTLVAKSRYPMLPWNWATEVPDRTL ECCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCC PIDVVKTLNLRWQEKPTFNAVYVCGERQGVTGHVVRAGTAGDLVAPTVVDALITHADVAR CHHHHHHCCCEECCCCCCEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH ERGRSILADVGRQAVVTLELPMLSSLGLLDPGLLLAVGEGGANWRGLVRATSIAAEWNES HHCCHHHHHCCCEEEEEEECCHHHHCCCCCCCEEEEECCCCCCCEEHEEHHHHHHHCCCC LTVRQTIEVERHYL EEEEEEEEHHHCCC >Mature Secondary Structure TVDLEFRGAWKPPNGGSADLDFGDTRQAVPEAASATVRVRLGPPKARIRAAYDNQVSRK EEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCHHHEEEHHHHHHHHH LEGGGQVPWQRAQRQGADLQGGWDDSARARSAAAMPWQPTMTLAGTVQSAGGDNQRARST HCCCCCCCHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHCCC SRVRWQGAAPAPSSTAERINQLVPQHGGLGLLWGEGAALSGTVLSPFVWLVPCSRGQSQG CCEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHCCEEEEEECCCCCCCC WQLAVPLALREAFGFSPGRWQSGRWSLPWEVGRQPRPGESHLPVDPPVVEPVPRYHPDLD CEEEEHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH FICHATRQGLAWRPVLWLDFGAHPCGQPNADVFSVPILKVYFVSNSVDVVRLPGREPIPV HHHHHHHCCCEECCEEEEECCCCCCCCCCCCEEEECEEEEEEECCCCEEEECCCCCCCCE KSVRLSIDEGSWAWGLSASLPYAALEMVEPTASGPVEIEITINGVTWVMLVEGFDVRREF EEEEEEECCCCEEECCCCCCCHHHHHHHCCCCCCCEEEEEEECCEEEEEEECCCHHHHHH GQASLDIRGRSTAAYLAEPYAPKRSFVPAAPFTARQLAEQELTRAGLVTGFTLDWRLPDW CCCEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEEECCCCCE LVPEGNWGYQSLSPMGVIGRIAEAAGGYVNAHPRLRTLVAKSRYPMLPWNWATEVPDRTL ECCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCC PIDVVKTLNLRWQEKPTFNAVYVCGERQGVTGHVVRAGTAGDLVAPTVVDALITHADVAR CHHHHHHCCCEECCCCCCEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH ERGRSILADVGRQAVVTLELPMLSSLGLLDPGLLLAVGEGGANWRGLVRATSIAAEWNES HHCCHHHHHCCCEEEEEEECCHHHHCCCCCCCEEEEECCCCCCCEEHEEHHHHHHHCCCC LTVRQTIEVERHYL EEEEEEEEHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA