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The map label for this gene is yfiY [H]

Identifier: 17230119

GI number: 17230119

Start: 3139457

End: 3140452

Strand: Direct

Name: yfiY [H]

Synonym: alr2627

Alternate gene names: 17230119

Gene position: 3139457-3140452 (Clockwise)

Preceding gene: 17230118

Following gene: 17230120

Centisome position: 48.95

GC content: 35.94

Gene sequence:

>996_bases
ATGAATGACAGTTATATCAAAATCAAAAACTTGACTCGCTGGTGGCGATTTGGGATTGTACTATTTTGTAGTCTAATCCT
ATCTATAGCTTGTCATCGTGATGGTTCTCTACCTGTTAATTATCAAAATACAAATGCAGCTTGTCGTCAGATGGAACACG
CTGCGGGAATTGCCTGTATTCCCGAAAAGTTTGAGCGACTTGTGACTTTAGATGATGGAGAAAATGCGATCGCACTAGGT
ATTAAACCTCTTGGTGCTGTAATCTCCGATTTTTCATCATTTTGGAAAGATAAGCTCACAGGAGTAAAAAACATTGGGAC
AACTGGTGAACCTAATTTAGAAAGTATTCTTGCACTCAAACCAGATTTAATTGTCGGTTCTGACTATGAACAAGATATTT
ATCCTATTACTTCAAAAATTGCTCCAACCGTTTTGTTGAAATTTGAACACAGTGGTCAATGGAAAGAGGTATTTACAAAT
ACTAGTGTGGCGTTAGGTAAGACAGAAGTTGGTCAAAAGGTAATGGAAAATTATTACCGTCGTCTTGCAGAATTTAAGCA
GAAGATGGGTAATAAGTTGTCAAAAATTAAAGTTTCTGTAGTGCGCGTATATCCAGATAAAATAAACCTTTATCTCCTTG
ATTCCTTCTGCGGAACTATTTTGCAAGATGCCGGATTATCTCGCCCCGAATCGCAAAATTTCACGGCATCAGAAGCAACA
ATTTTATTTAATAATCAGATTCAAATGTCCATCAGTAATGAATTAATCGAACAAGCTGATGGTGATGTTATATTTATCTG
GACGGCTGAGAATGATGCCAAAGGTAATCAAACAGCACAATATAAATTAGAGCAACTTAAAGCAAGTCCACTGTGGAGAA
ATTTAAAAGCTGTAAAAGAAAATAAGGTTTATGTAGTTCCAAGTTACTGGATAGGGAGTGGTATGTTAGCGGCAAACGCA
ATTATTGATGATTTATTTAAGTATCTAACAAATTAA

Upstream 100 bases:

>100_bases
AGAGTTGCCATAGAACCGGGCGCACCATTAACAGTGATTGGTAGTTTTTCTGTGACATTTTAATTTGTCAAAAATCAGGC
TTTAAGTATGAGATTCCATC

Downstream 100 bases:

>100_bases
TTATTAACTTAGTATAAATAGGGAAGGCTAAAATTTTACCAGCCCCTTCGGGGCAGAAGCAAGAGGGAACATAAGAGAAG
ATGAGCATCGGATGTAAGGT

Product: iron(III) dicitrate-binding periplasmic protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MNDSYIKIKNLTRWWRFGIVLFCSLILSIACHRDGSLPVNYQNTNAACRQMEHAAGIACIPEKFERLVTLDDGENAIALG
IKPLGAVISDFSSFWKDKLTGVKNIGTTGEPNLESILALKPDLIVGSDYEQDIYPITSKIAPTVLLKFEHSGQWKEVFTN
TSVALGKTEVGQKVMENYYRRLAEFKQKMGNKLSKIKVSVVRVYPDKINLYLLDSFCGTILQDAGLSRPESQNFTASEAT
ILFNNQIQMSISNELIEQADGDVIFIWTAENDAKGNQTAQYKLEQLKASPLWRNLKAVKENKVYVVPSYWIGSGMLAANA
IIDDLFKYLTN

Sequences:

>Translated_331_residues
MNDSYIKIKNLTRWWRFGIVLFCSLILSIACHRDGSLPVNYQNTNAACRQMEHAAGIACIPEKFERLVTLDDGENAIALG
IKPLGAVISDFSSFWKDKLTGVKNIGTTGEPNLESILALKPDLIVGSDYEQDIYPITSKIAPTVLLKFEHSGQWKEVFTN
TSVALGKTEVGQKVMENYYRRLAEFKQKMGNKLSKIKVSVVRVYPDKINLYLLDSFCGTILQDAGLSRPESQNFTASEAT
ILFNNQIQMSISNELIEQADGDVIFIWTAENDAKGNQTAQYKLEQLKASPLWRNLKAVKENKVYVVPSYWIGSGMLAANA
IIDDLFKYLTN
>Mature_331_residues
MNDSYIKIKNLTRWWRFGIVLFCSLILSIACHRDGSLPVNYQNTNAACRQMEHAAGIACIPEKFERLVTLDDGENAIALG
IKPLGAVISDFSSFWKDKLTGVKNIGTTGEPNLESILALKPDLIVGSDYEQDIYPITSKIAPTVLLKFEHSGQWKEVFTN
TSVALGKTEVGQKVMENYYRRLAEFKQKMGNKLSKIKVSVVRVYPDKINLYLLDSFCGTILQDAGLSRPESQNFTASEAT
ILFNNQIQMSISNELIEQADGDVIFIWTAENDAKGNQTAQYKLEQLKASPLWRNLKAVKENKVYVVPSYWIGSGMLAANA
IIDDLFKYLTN

Specific function: Part of the ABC transporter complex yfiYZ/yfhA/yusV involved in import of the iron-hydroxamate siderophores schizokinen, arthrobactin and corprogen. Binds the siderophores and delivers them to the surface of yfiZ/yfhA (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable). Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 37109; Mature: 37109

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDSYIKIKNLTRWWRFGIVLFCSLILSIACHRDGSLPVNYQNTNAACRQMEHAAGIACI
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCEEEC
PEKFERLVTLDDGENAIALGIKPLGAVISDFSSFWKDKLTGVKNIGTTGEPNLESILALK
CHHHHHEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHCC
PDLIVGSDYEQDIYPITSKIAPTVLLKFEHSGQWKEVFTNTSVALGKTEVGQKVMENYYR
CCEEECCCCCCCHHHHHHHCCCEEEEEECCCCCHHHHHCCCCEEECHHHHHHHHHHHHHH
RLAEFKQKMGNKLSKIKVSVVRVYPDKINLYLLDSFCGTILQDAGLSRPESQNFTASEAT
HHHHHHHHHCCHHHHEEEEEEEEECCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEE
ILFNNQIQMSISNELIEQADGDVIFIWTAENDAKGNQTAQYKLEQLKASPLWRNLKAVKE
EEECCEEEEHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHC
NKVYVVPSYWIGSGMLAANAIIDDLFKYLTN
CCEEEEECHHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNDSYIKIKNLTRWWRFGIVLFCSLILSIACHRDGSLPVNYQNTNAACRQMEHAAGIACI
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCEEEC
PEKFERLVTLDDGENAIALGIKPLGAVISDFSSFWKDKLTGVKNIGTTGEPNLESILALK
CHHHHHEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHCC
PDLIVGSDYEQDIYPITSKIAPTVLLKFEHSGQWKEVFTNTSVALGKTEVGQKVMENYYR
CCEEECCCCCCCHHHHHHHCCCEEEEEECCCCCHHHHHCCCCEEECHHHHHHHHHHHHHH
RLAEFKQKMGNKLSKIKVSVVRVYPDKINLYLLDSFCGTILQDAGLSRPESQNFTASEAT
HHHHHHHHHCCHHHHEEEEEEEEECCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEE
ILFNNQIQMSISNELIEQADGDVIFIWTAENDAKGNQTAQYKLEQLKASPLWRNLKAVKE
EEECCEEEEHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHC
NKVYVVPSYWIGSGMLAANAIIDDLFKYLTN
CCEEEEECHHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377 [H]