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The map label for this gene is yfmC [H]

Identifier: 17230089

GI number: 17230089

Start: 3108094

End: 3109143

Strand: Direct

Name: yfmC [H]

Synonym: alr2597

Alternate gene names: 17230089

Gene position: 3108094-3109143 (Clockwise)

Preceding gene: 17230088

Following gene: 17230091

Centisome position: 48.46

GC content: 40.29

Gene sequence:

>1050_bases
ATGCTTTTGGTGGGTGTTGCTATCGCTTTCCTGCATAAATATATTGTCTTGGTTGTACTCACGTCCATCTTGATCACAGC
TTGTCAAGGTGATATTATCGACAACCCCAATTTAGAAAGTAATGTACCACAGTCTACTGATTGTCGAGTGGTTGAACACG
CAGTAGGAAAAACCAAGATTTGCGGTAAACCTAAAAAAATCGCAGTTCTCGAACCTAAGATGCTGAGTCTGATGTTAGCC
TTGGATGTACAACCTGCTGCTTACGCGGATGCTTATTTAGTGAATGCGCCTCAATTCGATAACCCTAGCCAACAAATTCC
CTACCTGGGTAAGTATGTCACAAGTCAGCCGATTAATTTAGGCGATCGCTCTAGTCCTTCCCTAGAAGCTTTGACTCTAC
TCAAACCCGATTTGATTTTAGGCTTAAATTATCAGGACAATCAGTTATTTAGTGCGATCGCTCCAACCGTATTCATAGAT
AATGAGCAAAATTGGCAGGAAAGCATTAAAATTGTTGCCAAAGCCCTTGATAGCCAGAAAAATATACCATCAATTATTAC
CTCACAACAGCAACAGTTAGCTAAAGTCCGCGCTCAATTAGAATCTCTCGTCAGTACCCATCCGCGAGTCCTAAATATTG
TTTGCAGTCAATTAATGGACTATATAGAGGTTACATACAACGGAAATACAATTGAAATTCTCGAAAAAATTGGATTTCAA
CCTGTATTTTTGCCAGATATAGAACGAAAACCAGGGTTACGTCCACAAATTACCCTGGAAACCCTCGCTCAACTCGATGC
AGATATTGTAATTGTTAATACTTGGGTAGATAACTGGAATGGTAAATCTACTTATACCGTTCCCCTCAAAGAACTCAAGC
AAAAATGGGCTAAAAATCCCCTCTTGCACAATTCACAAGCTTGGAAAGAAGGACGGGTTTATTTTGTGGACTACACCCTC
TGGGGTAATGTAATTGGCGCACCTATTGCTAATGCTCTGATATTAGAACAACTACCATCACTTTTGCTATCCAACACCTT
GAAACCATAG

Upstream 100 bases:

>100_bases
ATCCTGGTGCGCCTTTTACTGTCATCGGTTCGTTTTCAATTCAGTTTTGACCTTGATTTTTGTTGAGTTGATCATGTTCT
GGAAAACTTGCTGCAATGCG

Downstream 100 bases:

>100_bases
ACATAGCTGGAAAATGCTGAGTGCTGAGTAAAAATCATCTGTAGCTGGTATATTGCTATTGATGAAGATAAAGAAGTAGC
CTTTAGTAGTGGACTGACGC

Product: iron(III) dicitrate-binding periplasmic protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: Ferric-citrate-binding protein [H]

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MLLVGVAIAFLHKYIVLVVLTSILITACQGDIIDNPNLESNVPQSTDCRVVEHAVGKTKICGKPKKIAVLEPKMLSLMLA
LDVQPAAYADAYLVNAPQFDNPSQQIPYLGKYVTSQPINLGDRSSPSLEALTLLKPDLILGLNYQDNQLFSAIAPTVFID
NEQNWQESIKIVAKALDSQKNIPSIITSQQQQLAKVRAQLESLVSTHPRVLNIVCSQLMDYIEVTYNGNTIEILEKIGFQ
PVFLPDIERKPGLRPQITLETLAQLDADIVIVNTWVDNWNGKSTYTVPLKELKQKWAKNPLLHNSQAWKEGRVYFVDYTL
WGNVIGAPIANALILEQLPSLLLSNTLKP

Sequences:

>Translated_349_residues
MLLVGVAIAFLHKYIVLVVLTSILITACQGDIIDNPNLESNVPQSTDCRVVEHAVGKTKICGKPKKIAVLEPKMLSLMLA
LDVQPAAYADAYLVNAPQFDNPSQQIPYLGKYVTSQPINLGDRSSPSLEALTLLKPDLILGLNYQDNQLFSAIAPTVFID
NEQNWQESIKIVAKALDSQKNIPSIITSQQQQLAKVRAQLESLVSTHPRVLNIVCSQLMDYIEVTYNGNTIEILEKIGFQ
PVFLPDIERKPGLRPQITLETLAQLDADIVIVNTWVDNWNGKSTYTVPLKELKQKWAKNPLLHNSQAWKEGRVYFVDYTL
WGNVIGAPIANALILEQLPSLLLSNTLKP
>Mature_349_residues
MLLVGVAIAFLHKYIVLVVLTSILITACQGDIIDNPNLESNVPQSTDCRVVEHAVGKTKICGKPKKIAVLEPKMLSLMLA
LDVQPAAYADAYLVNAPQFDNPSQQIPYLGKYVTSQPINLGDRSSPSLEALTLLKPDLILGLNYQDNQLFSAIAPTVFID
NEQNWQESIKIVAKALDSQKNIPSIITSQQQQLAKVRAQLESLVSTHPRVLNIVCSQLMDYIEVTYNGNTIEILEKIGFQ
PVFLPDIERKPGLRPQITLETLAQLDADIVIVNTWVDNWNGKSTYTVPLKELKQKWAKNPLLHNSQAWKEGRVYFVDYTL
WGNVIGAPIANALILEQLPSLLLSNTLKP

Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Binds citrate-dependent Fe(3+) and delivers it to the surface of yfmDE (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 38786; Mature: 38786

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLVGVAIAFLHKYIVLVVLTSILITACQGDIIDNPNLESNVPQSTDCRVVEHAVGKTKI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
CGKPKKIAVLEPKMLSLMLALDVQPAAYADAYLVNAPQFDNPSQQIPYLGKYVTSQPINL
CCCCCEEEEECHHHHHHHHHHCCCCCHHCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCC
GDRSSPSLEALTLLKPDLILGLNYQDNQLFSAIAPTVFIDNEQNWQESIKIVAKALDSQK
CCCCCCCHHHHEEECCCEEEECCCCCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHCCC
NIPSIITSQQQQLAKVRAQLESLVSTHPRVLNIVCSQLMDYIEVTYNGNTIEILEKIGFQ
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHCCC
PVFLPDIERKPGLRPQITLETLAQLDADIVIVNTWVDNWNGKSTYTVPLKELKQKWAKNP
EEECCCCCCCCCCCCEEHHHHHHHCCCCEEEEEEEECCCCCCEEEEECHHHHHHHHCCCC
LLHNSQAWKEGRVYFVDYTLWGNVIGAPIANALILEQLPSLLLSNTLKP
CCCCCCCCCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLLVGVAIAFLHKYIVLVVLTSILITACQGDIIDNPNLESNVPQSTDCRVVEHAVGKTKI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
CGKPKKIAVLEPKMLSLMLALDVQPAAYADAYLVNAPQFDNPSQQIPYLGKYVTSQPINL
CCCCCEEEEECHHHHHHHHHHCCCCCHHCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCC
GDRSSPSLEALTLLKPDLILGLNYQDNQLFSAIAPTVFIDNEQNWQESIKIVAKALDSQK
CCCCCCCHHHHEEECCCEEEECCCCCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHCCC
NIPSIITSQQQQLAKVRAQLESLVSTHPRVLNIVCSQLMDYIEVTYNGNTIEILEKIGFQ
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHCCC
PVFLPDIERKPGLRPQITLETLAQLDADIVIVNTWVDNWNGKSTYTVPLKELKQKWAKNP
EEECCCCCCCCCCCCEEHHHHHHHCCCCEEEEEEEECCCCCCEEEEECHHHHHHHHCCCC
LLHNSQAWKEGRVYFVDYTLWGNVIGAPIANALILEQLPSLLLSNTLKP
CCCCCCCCCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]