Click here to switch to the map view.

The map label for this gene is 17230052

Identifier: 17230052

GI number: 17230052

Start: 3059085

End: 3060044

Strand: Direct

Name: 17230052

Synonym: alr2560

Alternate gene names: NA

Gene position: 3059085-3060044 (Clockwise)

Preceding gene: 17230051

Following gene: 17230054

Centisome position: 47.7

GC content: 36.15

Gene sequence:

>960_bases
ATGGAAGACAATAAAATCCAAACAAATAATCCTGCTGATGCTATAATTGCGATTTCCTTGCAAATTCCCCAAGGCAATAT
TTTACAGCTTCATGTTGAGCAAAATGATTATAGTTTTTACCTGAATCAGCAAGTCGTAGAACAAATCCAAGAAGCTAGAA
ACAAGGGTATTTCTATTGAGATTCCACCAAAGCTTTTGCTACCTCTCTGGTACTGCACTTGCTTTAGCCATAATTTTGTA
CCAACCAGGAAGGAAGAAGATGGGACTAGGATAACTGTCACCAAGTCTTATACTATTTTTTTAATAAATATTCTGCAAGC
CTTTTGGAGTAAATCTCTACAAAAGAACACCTCTTTACAACCTGGTTTTACTTTCACCTCTTATTATCAGCAAGAGCAAT
TACAATCTGTTGATGCTCATAAACAAGAGCGCGTTTTACAAAGTGTTGTCTTATTTCATGGCGATATTTTGCACAAAATT
AAGTGGGATTTGCTAAATAACAATTTTGATTGCCAGAAAATTGTTGCGGCTCACTATTGGCTCATAGAACAAATTTTAGG
TGCTTTGAGGAGTAAGTTAAATCTGTTAGTTTGGGAAATAGCCGCGATTGTGCCTGCTGGTTTTTTGGCTTATAATTCAC
ATTCAATTAATGGGTTAACATCAGTCATAACTTGGATAGGTGCGACTATCACAATAGCTTTTAGCCGCCCTATATTGGTA
AAGATTTTACGAAGATTTACTACTCTTAAAAGCGAAAATTTGGATAATTGGGTTTGGGCTATCGTTTGTAGTGTTTCTGG
TATTATTTCTCATGGCGTTGGGGAGTTGAGTAACATTTACTTATTGTTGTTGCTAATTCTTTCGTGGTTGACACCAGAAA
TTGTCAAACGTACTTTACGTTATATCTGGCCACTACTAGGTAAATTCATGATACGCTCACTCTCCCGCTTACCTTTTTAA

Upstream 100 bases:

>100_bases
CAAGTTCACAATGAAGGTGTAGTTGCAGGTGAAAAACAATGGCATGGAGTGCTAGATTTTATGATTAATTTGGTAAGAAA
TATGGCAAATTTAGCTGTAA

Downstream 100 bases:

>100_bases
CAAATGCCAACATTGTTGTGCGATCGCCCAATCTTCTTGAGTATGAATTACTAACACCCGTACTGTAGAATCAGCAGTGG
CGATATCTATATCTACTGGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MEDNKIQTNNPADAIIAISLQIPQGNILQLHVEQNDYSFYLNQQVVEQIQEARNKGISIEIPPKLLLPLWYCTCFSHNFV
PTRKEEDGTRITVTKSYTIFLINILQAFWSKSLQKNTSLQPGFTFTSYYQQEQLQSVDAHKQERVLQSVVLFHGDILHKI
KWDLLNNNFDCQKIVAAHYWLIEQILGALRSKLNLLVWEIAAIVPAGFLAYNSHSINGLTSVITWIGATITIAFSRPILV
KILRRFTTLKSENLDNWVWAIVCSVSGIISHGVGELSNIYLLLLLILSWLTPEIVKRTLRYIWPLLGKFMIRSLSRLPF

Sequences:

>Translated_319_residues
MEDNKIQTNNPADAIIAISLQIPQGNILQLHVEQNDYSFYLNQQVVEQIQEARNKGISIEIPPKLLLPLWYCTCFSHNFV
PTRKEEDGTRITVTKSYTIFLINILQAFWSKSLQKNTSLQPGFTFTSYYQQEQLQSVDAHKQERVLQSVVLFHGDILHKI
KWDLLNNNFDCQKIVAAHYWLIEQILGALRSKLNLLVWEIAAIVPAGFLAYNSHSINGLTSVITWIGATITIAFSRPILV
KILRRFTTLKSENLDNWVWAIVCSVSGIISHGVGELSNIYLLLLLILSWLTPEIVKRTLRYIWPLLGKFMIRSLSRLPF
>Mature_319_residues
MEDNKIQTNNPADAIIAISLQIPQGNILQLHVEQNDYSFYLNQQVVEQIQEARNKGISIEIPPKLLLPLWYCTCFSHNFV
PTRKEEDGTRITVTKSYTIFLINILQAFWSKSLQKNTSLQPGFTFTSYYQQEQLQSVDAHKQERVLQSVVLFHGDILHKI
KWDLLNNNFDCQKIVAAHYWLIEQILGALRSKLNLLVWEIAAIVPAGFLAYNSHSINGLTSVITWIGATITIAFSRPILV
KILRRFTTLKSENLDNWVWAIVCSVSGIISHGVGELSNIYLLLLLILSWLTPEIVKRTLRYIWPLLGKFMIRSLSRLPF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36621; Mature: 36621

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDNKIQTNNPADAIIAISLQIPQGNILQLHVEQNDYSFYLNQQVVEQIQEARNKGISIE
CCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCEEEECHHHHHHHHHHHHCCCEEE
IPPKLLLPLWYCTCFSHNFVPTRKEEDGTRITVTKSYTIFLINILQAFWSKSLQKNTSLQ
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCC
PGFTFTSYYQQEQLQSVDAHKQERVLQSVVLFHGDILHKIKWDLLNNNFDCQKIVAAHYW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LIEQILGALRSKLNLLVWEIAAIVPAGFLAYNSHSINGLTSVITWIGATITIAFSRPILV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHEEEEECCHHHH
KILRRFTTLKSENLDNWVWAIVCSVSGIISHGVGELSNIYLLLLLILSWLTPEIVKRTLR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
YIWPLLGKFMIRSLSRLPF
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEDNKIQTNNPADAIIAISLQIPQGNILQLHVEQNDYSFYLNQQVVEQIQEARNKGISIE
CCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCEEEECHHHHHHHHHHHHCCCEEE
IPPKLLLPLWYCTCFSHNFVPTRKEEDGTRITVTKSYTIFLINILQAFWSKSLQKNTSLQ
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCC
PGFTFTSYYQQEQLQSVDAHKQERVLQSVVLFHGDILHKIKWDLLNNNFDCQKIVAAHYW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LIEQILGALRSKLNLLVWEIAAIVPAGFLAYNSHSINGLTSVITWIGATITIAFSRPILV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHEEEEECCHHHH
KILRRFTTLKSENLDNWVWAIVCSVSGIISHGVGELSNIYLLLLLILSWLTPEIVKRTLR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
YIWPLLGKFMIRSLSRLPF
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA