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The map label for this gene is hybD [C]

Identifier: 17228918

GI number: 17228918

Start: 1686942

End: 1687403

Strand: Direct

Name: hybD [C]

Synonym: alr1423

Alternate gene names: 17228918

Gene position: 1686942-1687403 (Clockwise)

Preceding gene: 17228917

Following gene: 17228923

Centisome position: 26.3

GC content: 41.34

Gene sequence:

>462_bases
ATGCTGACTATTATCGGTTGCGGAAATCTCAATCGCAGTGACGATGCTGTAGGCGTAATCATCGCTCAACGCTTACAAAA
ATATCTAGCCGAAAATCCTCATCCCCATGTGCAGGTATATGACTGTGGAACCGCAGGGATGGAAGTTATGTTTCAAGCTA
GAGGTAGCAAACAATTAGTAATTATTGATGCGAGTTCCACTGGTTCGGAACCCGGCGCAGTATTTAAAGTCCCTGGTGAA
GAATTAGCAGCTTTACCCGAACCTAGTTATAACTTACATGATTTTCGTTGGGATCATGCTTTAGCCGCCGGGAGAAAAAT
CTTTCCAGATGATTTTCCGCAAGACGTAACAGTTTATTTAATTGAGGCGGCGAATCTTGATTTTGGACTAGAGTTAAGTC
CTGTTGTTCAACAATCTGCTGATTTGGTTGTTGAAAAAATTGTGGAAATAATTCGTAATTAG

Upstream 100 bases:

>100_bases
TAATGTTTAAAACCTTTACCCCCAGTCTCAACAGACAACCTGGATGCGTAAATCCTACATATTGAGTAATACCTGTTCTA
CCTGCTCAAATATAATACCT

Downstream 100 bases:

>100_bases
GATGGGGATTGGGGATTAGGGAACTAGGTAATTTTTTCTCCTCTGCATCCCCTGCTCCCTACTCTCCATCACGCCATATC
TCGATATACAGAGAGTTCAT

Product: hydrogenase maturation protease

Products: NA

Alternate protein names: Peptidase; Hydrogenase Expression/Formation Protein; Ni Fe-Hydrogenase Maturation Factor; Hydrogenase Maturation Protease HyaD; Ni/Fe Hydrogenase Maturation Protease; Hydrogenase Expression/Formation Protease; HupD Hydrogenase Related Function; Hydrogenase 2 Maturation Protease

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MLTIIGCGNLNRSDDAVGVIIAQRLQKYLAENPHPHVQVYDCGTAGMEVMFQARGSKQLVIIDASSTGSEPGAVFKVPGE
ELAALPEPSYNLHDFRWDHALAAGRKIFPDDFPQDVTVYLIEAANLDFGLELSPVVQQSADLVVEKIVEIIRN

Sequences:

>Translated_153_residues
MLTIIGCGNLNRSDDAVGVIIAQRLQKYLAENPHPHVQVYDCGTAGMEVMFQARGSKQLVIIDASSTGSEPGAVFKVPGE
ELAALPEPSYNLHDFRWDHALAAGRKIFPDDFPQDVTVYLIEAANLDFGLELSPVVQQSADLVVEKIVEIIRN
>Mature_153_residues
MLTIIGCGNLNRSDDAVGVIIAQRLQKYLAENPHPHVQVYDCGTAGMEVMFQARGSKQLVIIDASSTGSEPGAVFKVPGE
ELAALPEPSYNLHDFRWDHALAAGRKIFPDDFPQDVTVYLIEAANLDFGLELSPVVQQSADLVVEKIVEIIRN

Specific function: Protease Involved In The C-Terminal Processing Of Hybc, The Large Subunit Of Hydrogenase 2. Specifically Cleaves Off A 15 Amino Acid Peptide From The C Terminus Of The Precursor Of Hybc. [C]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789367, Length=154, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.24.- [C]

Molecular weight: Translated: 16718; Mature: 16718

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTIIGCGNLNRSDDAVGVIIAQRLQKYLAENPHPHVQVYDCGTAGMEVMFQARGSKQLV
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCCEEE
IIDASSTGSEPGAVFKVPGEELAALPEPSYNLHDFRWDHALAAGRKIFPDDFPQDVTVYL
EEECCCCCCCCCEEEECCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEE
IEAANLDFGLELSPVVQQSADLVVEKIVEIIRN
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLTIIGCGNLNRSDDAVGVIIAQRLQKYLAENPHPHVQVYDCGTAGMEVMFQARGSKQLV
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCCEEE
IIDASSTGSEPGAVFKVPGEELAALPEPSYNLHDFRWDHALAAGRKIFPDDFPQDVTVYL
EEECCCCCCCCCEEEECCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEE
IEAANLDFGLELSPVVQQSADLVVEKIVEIIRN
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA