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The map label for this gene is yjfH [C]

Identifier: 17228654

GI number: 17228654

Start: 1364601

End: 1365608

Strand: Direct

Name: yjfH [C]

Synonym: alr1159

Alternate gene names: 17228654

Gene position: 1364601-1365608 (Clockwise)

Preceding gene: 17228653

Following gene: 17228655

Centisome position: 21.28

GC content: 46.33

Gene sequence:

>1008_bases
ATGACTAACAAACCTAAAAAAATTAAGACTGTCGGTGAGGCCAATCGCGGACAACCCGTAAAAATCAAGGGTAAACGCGT
CATTGCCAATCCTATTCGCAGCCAAAGAAATGGGGAGAGCAATTCTGGCTCTAGCAGCAGTTCACGTCCTCCACGTCCGC
GTCGTCAATATTCTGATTCAGCTCCTATTCGTCAATATTCTGATTCAGCCCCTATTCCCAAACCACAAGAGGATAACGAC
AACGATATTATCTATGGTCGTCATCCAGTCCTTAGTGCTTTGCAAAATCAACGTGGACTCAACCGCATCTGGGTAACTCC
TCGACTACGTTACGATCCCCGGTTTCATAATTTGATTCTGCAAGCCAAGGACAATGGTGCAGTCATAGACGAAGTAGACA
CCAAACGCTTAGATCAAATCACCGACCAAGCTAATCACCAAGGCATAGCTGCACAGATTGCGCCCTACTCGTATATTGAT
TTATATGAATTAATCGCCCAGGCTAAAACTGTCACAGATCCCGTCATTGTGGTAGCTGATAGCATCACAGATCCCCATAA
TTTAGGGGCAATTATTCGTACAGCCGAAGCAATTGGCGCTCAAGGCTTGGTTATTCCCCAAAGAAGAGCATCCGGGATCA
CTTCTACAGTCGTGAAAGTAGCAGCAGGCGCTTTAGAAAACTTTCCTGTAGCCAGAGTTGTCAACCTTGGACGCGCTTTA
GAAGATTTAAAAGAGGCAGGCTTCTGGATTTATGGAACTGCGGCTGGAGGTAGTGAACCTCTGCACACGGTCAGCTTCCG
GGGACCCATTGTTTTGGTCATCGGCTCGGAAGGCGAAGGCTTGAGTATGTTAACTCAGCGCTCATGTGATGTTTTGGTAT
CAATTCCCCTGATGGGTAAGACCCCTAGTCTGAATGCCTCAGTTGCCGCAGGAATGGCGCTTTATGAGATTTTCCGCCAA
CGCTCATTAAACACTTTATACCTAGATAAATTACAAAAGCCTCTATGA

Upstream 100 bases:

>100_bases
AATTTAACTACTCAATCTCAATGATCGGAAGTTTTTTAAGTTTAGGTTCAGTACATACAGGAATCGGACTGTCTACCCAT
GCGCCATACGCCAAAATATT

Downstream 100 bases:

>100_bases
AAATAATCAGTAAAAGAGTATAAAGAAATGTAACAACAAAAAATAGCAATCTCTATTGCTGAACATTCAGTACCACTTTG
ATCAATTGGCGACAACCATG

Product: tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MTNKPKKIKTVGEANRGQPVKIKGKRVIANPIRSQRNGESNSGSSSSSRPPRPRRQYSDSAPIRQYSDSAPIPKPQEDND
NDIIYGRHPVLSALQNQRGLNRIWVTPRLRYDPRFHNLILQAKDNGAVIDEVDTKRLDQITDQANHQGIAAQIAPYSYID
LYELIAQAKTVTDPVIVVADSITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLGRAL
EDLKEAGFWIYGTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAAGMALYEIFRQ
RSLNTLYLDKLQKPL

Sequences:

>Translated_335_residues
MTNKPKKIKTVGEANRGQPVKIKGKRVIANPIRSQRNGESNSGSSSSSRPPRPRRQYSDSAPIRQYSDSAPIPKPQEDND
NDIIYGRHPVLSALQNQRGLNRIWVTPRLRYDPRFHNLILQAKDNGAVIDEVDTKRLDQITDQANHQGIAAQIAPYSYID
LYELIAQAKTVTDPVIVVADSITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLGRAL
EDLKEAGFWIYGTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAAGMALYEIFRQ
RSLNTLYLDKLQKPL
>Mature_334_residues
TNKPKKIKTVGEANRGQPVKIKGKRVIANPIRSQRNGESNSGSSSSSRPPRPRRQYSDSAPIRQYSDSAPIPKPQEDNDN
DIIYGRHPVLSALQNQRGLNRIWVTPRLRYDPRFHNLILQAKDNGAVIDEVDTKRLDQITDQANHQGIAAQIAPYSYIDL
YELIAQAKTVTDPVIVVADSITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLGRALE
DLKEAGFWIYGTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAAGMALYEIFRQR
SLNTLYLDKLQKPL

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=259, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1790623, Length=246, Percent_Identity=39.4308943089431, Blast_Score=178, Evalue=4e-46,
Organism=Escherichia coli, GI1788935, Length=238, Percent_Identity=26.890756302521, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790083, Length=177, Percent_Identity=29.9435028248588, Blast_Score=70, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17555908, Length=259, Percent_Identity=28.5714285714286, Blast_Score=92, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6324775, Length=297, Percent_Identity=29.2929292929293, Blast_Score=88, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 36485; Mature: 36354

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKPKKIKTVGEANRGQPVKIKGKRVIANPIRSQRNGESNSGSSSSSRPPRPRRQYSDS
CCCCCCHHHCCCCCCCCCCEEEECCEEEHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCC
APIRQYSDSAPIPKPQEDNDNDIIYGRHPVLSALQNQRGLNRIWVTPRLRYDPRFHNLIL
CCCHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEE
QAKDNGAVIDEVDTKRLDQITDQANHQGIAAQIAPYSYIDLYELIAQAKTVTDPVIVVAD
EECCCCCEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEC
SITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLGRAL
CCCCCHHHHHHHHHHHHHCCCCEEECHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EDLKEAGFWIYGTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGK
HHHHHCCEEEEEECCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCEEEEEECCCC
TPSLNASVAAGMALYEIFRQRSLNTLYLDKLQKPL
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
>Mature Secondary Structure 
TNKPKKIKTVGEANRGQPVKIKGKRVIANPIRSQRNGESNSGSSSSSRPPRPRRQYSDS
CCCCCHHHCCCCCCCCCCEEEECCEEEHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCC
APIRQYSDSAPIPKPQEDNDNDIIYGRHPVLSALQNQRGLNRIWVTPRLRYDPRFHNLIL
CCCHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEE
QAKDNGAVIDEVDTKRLDQITDQANHQGIAAQIAPYSYIDLYELIAQAKTVTDPVIVVAD
EECCCCCEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEC
SITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLGRAL
CCCCCHHHHHHHHHHHHHCCCCEEECHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EDLKEAGFWIYGTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGK
HHHHHCCEEEEEECCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCEEEEEECCCC
TPSLNASVAAGMALYEIFRQRSLNTLYLDKLQKPL
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]