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The map label for this gene is yjcF [C]

Identifier: 17228637

GI number: 17228637

Start: 1341881

End: 1343446

Strand: Direct

Name: yjcF [C]

Synonym: alr1142

Alternate gene names: 17228637

Gene position: 1341881-1343446 (Clockwise)

Preceding gene: 17228634

Following gene: 17228638

Centisome position: 20.92

GC content: 42.85

Gene sequence:

>1566_bases
ATGAATGTAGAGGAATTGCTGGCACAATATGCGACTGGAGTCATCAATTTTAGTGGTGTTGACCTCTCGGAAGCTAATTT
GAGTGGTGTCAAACTCTGTGGTGTGAATTTTAGCCAAGCAAATTTGAGTATAGCTAACCTGAGTGGGTCAAATTTGAGCG
AAGCTGACTTTAGCCATGCCAAACTGAACGTAGCTAGACTAAGTGGTGCTAACCTCACTAATGCTATTTTCAATCATTCC
AGCCTCAATGTTGCTAATTTAATTCGTGCTGACCTCAGTCGCGCTCAATTGCGTGGGGCTTCTTTGGTACGTGCTGAGTT
AATTCGTGCTGAACTCAGTCGGGTTGATTTATCTGAAGCAAACCTTAATAGTGCTGATTTGCGAGAAGCCACACTCCGCC
ACGCCAATCTTCGCCACGCCAATTTGAACGGAGCCAGCCTGAAAGGTGCATCCTTGGTAGGAGCCAACTTGGAAATGGCA
AACCTCAATGGATCTGACTTAAGTCGTTGTGATTTAACGAGCGCCAACCTGCGGGATGCTGAACTAAAACAGGTAAACTT
CCGCCATGCTAACCTTAGTGGTGCAGATTTGAGCGGGGCGAACCTCCGGTGGGCTGATTTGAGTGGTGTAAACCTGAGTT
GGGCTGATTTAAGTAATGCAAAATTGAGTGGCGCTAATTTAGTCGGCGCAGACTTGAGCAATGCGAATTTAACAAACGCT
AGTTTAGTCCATGCCAATTTAATTCAAGCAAAATTAATTAGAGCAGAATGGGTAGGTGCTGATTTAACCAGCGCCATTTT
GACTGGTGCAAAACTTTACTCCACTTCCAGATTTGGCTTAAAAACAGAGGGTTTGATTTGTCAATGGATTGACTTAAGTC
CTACAGGCGATCGCTCCATTATCCAACGGTTTGATACTGAAGATCCACGAGAATTTTTCAACGAAACCCCGCCAACCATT
CAAATTATCATCGATGCAGCCTTAGAAGCAGAAGCGAACTTTGCCTTGGCTGGCGCTTACTACCACATCGCCCAAGAATA
CTCAATCCTCAAACAACCCCCCAGCATGGAAATCAGTCGTCGTCGGACTGTGTTTACATTCCGGGTAGATAATGACGCGG
ACTTATTACCCACAGCCTGTATGGCAATTTTACCTTTTAAAGATGCTGTTAATACCCAAAAGAATATTTATGCCCTGTTA
GCCATGATGGAACAAGAAAATATATCTTCCTTAGGAATAAAAACACCCCATCGGGTGAAGGAATTAACGAGTGCGATCGC
GGAAGCTATAAATCAGGCACAGACAATGAAAAAAACCAAAAAGAACCTGCATTTAGCCTCAAAAATCAAATTTTTTCAAG
CTCCAACCCAAACCATATTAACTAATTCCAGCGCTCAGACTTTAATTGTTCATGACAGCCCCAACTTTGGTAAACGATTT
ATCAACTCCTCAGATACCGAAATGACTTTTTTATCCGATGTATCTAGTGAATCTCTCCCACATAACCTACCTGGTTTAAA
CACACTTACGGATTTTGTTAACAGTTTTCACTATGTGAATGAATAA

Upstream 100 bases:

>100_bases
GAACCACCAATCAAGCCTAAACCTAAAATTCCAATTTGCATTTTTGTCATTAGTCAATGGTCGTTTTTAATCACGAATTA
GATAAATCATGAGGTATTAG

Downstream 100 bases:

>100_bases
TAAAGCAGGGGAGCAGGGGAGAGCTTTATTGCAAATTGGTTTTATTTCCCCCATTCCTCAGTCACGATTAAACAAACTTT
TGGAGGAAACAAATTGGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MNVEELLAQYATGVINFSGVDLSEANLSGVKLCGVNFSQANLSIANLSGSNLSEADFSHAKLNVARLSGANLTNAIFNHS
SLNVANLIRADLSRAQLRGASLVRAELIRAELSRVDLSEANLNSADLREATLRHANLRHANLNGASLKGASLVGANLEMA
NLNGSDLSRCDLTSANLRDAELKQVNFRHANLSGADLSGANLRWADLSGVNLSWADLSNAKLSGANLVGADLSNANLTNA
SLVHANLIQAKLIRAEWVGADLTSAILTGAKLYSTSRFGLKTEGLICQWIDLSPTGDRSIIQRFDTEDPREFFNETPPTI
QIIIDAALEAEANFALAGAYYHIAQEYSILKQPPSMEISRRRTVFTFRVDNDADLLPTACMAILPFKDAVNTQKNIYALL
AMMEQENISSLGIKTPHRVKELTSAIAEAINQAQTMKKTKKNLHLASKIKFFQAPTQTILTNSSAQTLIVHDSPNFGKRF
INSSDTEMTFLSDVSSESLPHNLPGLNTLTDFVNSFHYVNE

Sequences:

>Translated_521_residues
MNVEELLAQYATGVINFSGVDLSEANLSGVKLCGVNFSQANLSIANLSGSNLSEADFSHAKLNVARLSGANLTNAIFNHS
SLNVANLIRADLSRAQLRGASLVRAELIRAELSRVDLSEANLNSADLREATLRHANLRHANLNGASLKGASLVGANLEMA
NLNGSDLSRCDLTSANLRDAELKQVNFRHANLSGADLSGANLRWADLSGVNLSWADLSNAKLSGANLVGADLSNANLTNA
SLVHANLIQAKLIRAEWVGADLTSAILTGAKLYSTSRFGLKTEGLICQWIDLSPTGDRSIIQRFDTEDPREFFNETPPTI
QIIIDAALEAEANFALAGAYYHIAQEYSILKQPPSMEISRRRTVFTFRVDNDADLLPTACMAILPFKDAVNTQKNIYALL
AMMEQENISSLGIKTPHRVKELTSAIAEAINQAQTMKKTKKNLHLASKIKFFQAPTQTILTNSSAQTLIVHDSPNFGKRF
INSSDTEMTFLSDVSSESLPHNLPGLNTLTDFVNSFHYVNE
>Mature_521_residues
MNVEELLAQYATGVINFSGVDLSEANLSGVKLCGVNFSQANLSIANLSGSNLSEADFSHAKLNVARLSGANLTNAIFNHS
SLNVANLIRADLSRAQLRGASLVRAELIRAELSRVDLSEANLNSADLREATLRHANLRHANLNGASLKGASLVGANLEMA
NLNGSDLSRCDLTSANLRDAELKQVNFRHANLSGADLSGANLRWADLSGVNLSWADLSNAKLSGANLVGADLSNANLTNA
SLVHANLIQAKLIRAEWVGADLTSAILTGAKLYSTSRFGLKTEGLICQWIDLSPTGDRSIIQRFDTEDPREFFNETPPTI
QIIIDAALEAEANFALAGAYYHIAQEYSILKQPPSMEISRRRTVFTFRVDNDADLLPTACMAILPFKDAVNTQKNIYALL
AMMEQENISSLGIKTPHRVKELTSAIAEAINQAQTMKKTKKNLHLASKIKFFQAPTQTILTNSSAQTLIVHDSPNFGKRF
INSSDTEMTFLSDVSSESLPHNLPGLNTLTDFVNSFHYVNE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=155, Percent_Identity=41.9354838709677, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221377802, Length=168, Percent_Identity=38.6904761904762, Blast_Score=94, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 56496; Mature: 56496

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVEELLAQYATGVINFSGVDLSEANLSGVKLCGVNFSQANLSIANLSGSNLSEADFSHA
CCHHHHHHHHHCCEEEECCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCHH
KLNVARLSGANLTNAIFNHSSLNVANLIRADLSRAQLRGASLVRAELIRAELSRVDLSEA
EEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
NLNSADLREATLRHANLRHANLNGASLKGASLVGANLEMANLNGSDLSRCDLTSANLRDA
CCCHHHHHHHHHHHCCCEECCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCC
ELKQVNFRHANLSGADLSGANLRWADLSGVNLSWADLSNAKLSGANLVGADLSNANLTNA
HHHHEEEEECCCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCC
SLVHANLIQAKLIRAEWVGADLTSAILTGAKLYSTSRFGLKTEGLICQWIDLSPTGDRSI
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHH
IQRFDTEDPREFFNETPPTIQIIIDAALEAEANFALAGAYYHIAQEYSILKQPPSMEISR
HHHCCCCCHHHHHCCCCCEEEEEEEEHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCC
RRTVFTFRVDNDADLLPTACMAILPFKDAVNTQKNIYALLAMMEQENISSLGIKTPHRVK
CEEEEEEEECCCCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCHHHCCCCCHHHHH
ELTSAIAEAINQAQTMKKTKKNLHLASKIKFFQAPTQTILTNSSAQTLIVHDSPNFGKRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCEEEEECCCCHHHHH
INSSDTEMTFLSDVSSESLPHNLPGLNTLTDFVNSFHYVNE
CCCCCCCEEEEHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNVEELLAQYATGVINFSGVDLSEANLSGVKLCGVNFSQANLSIANLSGSNLSEADFSHA
CCHHHHHHHHHCCEEEECCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCHH
KLNVARLSGANLTNAIFNHSSLNVANLIRADLSRAQLRGASLVRAELIRAELSRVDLSEA
EEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
NLNSADLREATLRHANLRHANLNGASLKGASLVGANLEMANLNGSDLSRCDLTSANLRDA
CCCHHHHHHHHHHHCCCEECCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCC
ELKQVNFRHANLSGADLSGANLRWADLSGVNLSWADLSNAKLSGANLVGADLSNANLTNA
HHHHEEEEECCCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCC
SLVHANLIQAKLIRAEWVGADLTSAILTGAKLYSTSRFGLKTEGLICQWIDLSPTGDRSI
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHH
IQRFDTEDPREFFNETPPTIQIIIDAALEAEANFALAGAYYHIAQEYSILKQPPSMEISR
HHHCCCCCHHHHHCCCCCEEEEEEEEHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCC
RRTVFTFRVDNDADLLPTACMAILPFKDAVNTQKNIYALLAMMEQENISSLGIKTPHRVK
CEEEEEEEECCCCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCHHHCCCCCHHHHH
ELTSAIAEAINQAQTMKKTKKNLHLASKIKFFQAPTQTILTNSSAQTLIVHDSPNFGKRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCEEEEECCCCHHHHH
INSSDTEMTFLSDVSSESLPHNLPGLNTLTDFVNSFHYVNE
CCCCCCCEEEEHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA