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The map label for this gene is pbsY

Identifier: 17228520

GI number: 17228520

Start: 1195853

End: 1195978

Strand: Direct

Name: pbsY

Synonym: asr1025

Alternate gene names: 17228520

Gene position: 1195853-1195978 (Clockwise)

Preceding gene: 17228519

Following gene: 17228521

Centisome position: 18.65

GC content: 42.86

Gene sequence:

>126_bases
ATGGATATTGATTTTCGTGTAGCGATCGTTTTAGCGCCAATTGCCGTTGCTGCTGGCTGGGCTGCTTTTAATATTGGTGC
TGCTGCCATCAGACAAGTTCAAAACTTTTTGAACAGAGAAGCTTAA

Upstream 100 bases:

>100_bases
TCTTTACAAATTTATGTAGAAAAATTGCCCACTTCAGCTAAAAATAAAAATGAGGACAGTTGACAAAAATTTAATTTCTA
CGTGATAGAGGGGTTTAGAT

Downstream 100 bases:

>100_bases
ATCTCGGTTAAAAATTTTAACTTTGCACCGACTGTTCTCTTTACTGAGACAGTCGGTTTTAATCTGGGGTTGGGGAGATG
AGGAAATAAATCAACAAAAA

Product: photosystem II protein Y

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 41; Mature: 41

Protein sequence:

>41_residues
MDIDFRVAIVLAPIAVAAGWAAFNIGAAAIRQVQNFLNREA

Sequences:

>Translated_41_residues
MDIDFRVAIVLAPIAVAAGWAAFNIGAAAIRQVQNFLNREA
>Mature_41_residues
MDIDFRVAIVLAPIAVAAGWAAFNIGAAAIRQVQNFLNREA

Specific function: Manganese-binding polypeptide with L-arginine metabolizing enzyme activity. Component of the core of photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBY_ANAVT (Q3M6U8)

Other databases:

- EMBL:   CP000117
- RefSeq:   YP_324183.1
- STRING:   Q3M6U8
- GeneID:   3679101
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_3682
- HOGENOM:   HBG019111
- ProtClustDB:   PRK13240
- BioCyc:   AVAR240292:AVA_3682-MONOMER
- GO:   GO:0015979
- HAMAP:   MF_00717
- InterPro:   IPR009388

Pfam domain/function: PF06298 PsbY

EC number: NA

Molecular weight: Translated: 4385; Mature: 4385

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xe3678a4)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIDFRVAIVLAPIAVAAGWAAFNIGAAAIRQVQNFLNREA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure
MDIDFRVAIVLAPIAVAAGWAAFNIGAAAIRQVQNFLNREA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA