Definition Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome.
Accession NC_010503
Length 751,679

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The map label for this gene is atpD2 [H]

Identifier: 170762398

GI number: 170762398

Start: 64906

End: 66270

Strand: Direct

Name: atpD2 [H]

Synonym: UPA3_0053

Alternate gene names: 170762398

Gene position: 64906-66270 (Clockwise)

Preceding gene: 170762321

Following gene: 170762141

Centisome position: 8.63

GC content: 28.5

Gene sequence:

>1365_bases
ATGAATAACGGCCGAGTTATAAAAATCTGATCAGATATTGTCGAAATTGAATTTAAAAACAGCTTACCAGCTTTAAATCA
CTTATTAACAACTCATGATGGCAATACTTTCTTATTAGTTAAAAGATTAGTTGATGCTACACATGCGAGAGCAATTGTTG
TTTATGCATCAAAAGATTTAGCAATTAATGATATTGTTATTAATACAAACAAAAGTTTTATGGTCCCAGTTGGTAATGAT
TCAAAAAATAATATTTATAATTTTTGGGGACATCCTTTATTAGAAACTAATAAAACACCTAAATATGTTGAAATGAATTC
AACAATTTTAAACGAGCGATATGTTGATAAAAGTATAGAAATTGTAGAGACAGGAATTAAAGCAATTGATTTTTTTATGC
CAATTCTAAAAGGATATAAATTAGGAATCTTTGGTGGTGCTGGAGTTGGTAAAACAGTTTTAATGAAAGAAATCATTTTT
AACTTAAACAGACATAAACAAGCAAATTCAAATATTTTTATTGGTTCAGGAGAGCGTTCACGTGAAGCAATTGAATTATA
TAATGAATTGACTGCTTCTAATTTAATGCCTAATTCAGTAATGTTTATTTCTAAGATGAATGAAGCTCCTGGTGCACGTA
CTTCAATTGTACCAATTGGAATTACTGCTGCTGAATATTTACGTGATCAAAACAAAGAAAATGTTTTATTGTTTATTGAT
AATATTTATCGTTTTATTCAAGCTGAAAATGAAGTTTCTACTGCATTAGGTAAAAAACCGTCTGTTGGAGGTTATCAATC
AACACTAGAAAGTGATGTTACACATATTCAAAATCGATTATTTAGAAATAAAAATGGATCAATTACCTCATTTCAAACAA
TTTTTTTGCCAATGGATGATTTAAGTGATCCATCAGCTGTCGCTGTATTTAATCATTTAGATGGAAAATTAGTATTATCG
CGAGCACAAGCTGCTAAAAATATTTTTCCAGCATTTGATCCATTAGCAAGCTCAACAAACGCTATTGATCCTAAAATTAT
TGGTGAACGTCATTATAATGCAATTATCGAAACTAAAAAAGTTTTAAAAGCTTATAAAGATCTAGAAGATGTTATTTTAA
TTTTAGGTTTTGATGAACTAGATGCTGAAAGTAAAATTATTGTTAAAAAAGCTTTACAGCTAGAAATGTTCTTTACACAA
AACTTTTTTATGACTGAACATTTCACAAAAGCTCCTGGTCAGTTTGTTCCATTAAAAGAGACTGTTGAAAGTGTAATTCG
TATTTTAGAAGGTAAATATTTAAAACAAAGTCCAGATGTTTTTGCCTATATTGGTTCAAATAAGGATATTTCTCAAGATC
ATTAA

Upstream 100 bases:

>100_bases
ATTACTTAAATTTAAATTGAGAAGTTGAATTAGAACATAGTTTTATTCCTTTACAAAATGAGTTTTTAATGAATGTAGCA
AAATTTTTAGGAGATAAATA

Downstream 100 bases:

>100_bases
TAATTATTAATTTATATTAAATTTAAACCTTGGTAACTATATTAATTACCGAGGTTTTTTATTAAAATGTTCACCATTAA
TATGTTTTGTTTAGTTTCAA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 2; F-ATPase subunit beta 2 [H]

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MNNGRVIKIWSDIVEIEFKNSLPALNHLLTTHDGNTFLLVKRLVDATHARAIVVYASKDLAINDIVINTNKSFMVPVGND
SKNNIYNFWGHPLLETNKTPKYVEMNSTILNERYVDKSIEIVETGIKAIDFFMPILKGYKLGIFGGAGVGKTVLMKEIIF
NLNRHKQANSNIFIGSGERSREAIELYNELTASNLMPNSVMFISKMNEAPGARTSIVPIGITAAEYLRDQNKENVLLFID
NIYRFIQAENEVSTALGKKPSVGGYQSTLESDVTHIQNRLFRNKNGSITSFQTIFLPMDDLSDPSAVAVFNHLDGKLVLS
RAQAAKNIFPAFDPLASSTNAIDPKIIGERHYNAIIETKKVLKAYKDLEDVILILGFDELDAESKIIVKKALQLEMFFTQ
NFFMTEHFTKAPGQFVPLKETVESVIRILEGKYLKQSPDVFAYIGSNKDISQDH

Sequences:

>Translated_454_residues
MNNGRVIKI*SDIVEIEFKNSLPALNHLLTTHDGNTFLLVKRLVDATHARAIVVYASKDLAINDIVINTNKSFMVPVGND
SKNNIYNFWGHPLLETNKTPKYVEMNSTILNERYVDKSIEIVETGIKAIDFFMPILKGYKLGIFGGAGVGKTVLMKEIIF
NLNRHKQANSNIFIGSGERSREAIELYNELTASNLMPNSVMFISKMNEAPGARTSIVPIGITAAEYLRDQNKENVLLFID
NIYRFIQAENEVSTALGKKPSVGGYQSTLESDVTHIQNRLFRNKNGSITSFQTIFLPMDDLSDPSAVAVFNHLDGKLVLS
RAQAAKNIFPAFDPLASSTNAIDPKIIGERHYNAIIETKKVLKAYKDLEDVILILGFDELDAESKIIVKKALQLEMFFTQ
NFFMTEHFTKAPGQFVPLKETVESVIRILEGKYLKQSPDVFAYIGSNKDISQDH
>Mature_454_residues
MNNGRVIKI*SDIVEIEFKNSLPALNHLLTTHDGNTFLLVKRLVDATHARAIVVYASKDLAINDIVINTNKSFMVPVGND
SKNNIYNFWGHPLLETNKTPKYVEMNSTILNERYVDKSIEIVETGIKAIDFFMPILKGYKLGIFGGAGVGKTVLMKEIIF
NLNRHKQANSNIFIGSGERSREAIELYNELTASNLMPNSVMFISKMNEAPGARTSIVPIGITAAEYLRDQNKENVLLFID
NIYRFIQAENEVSTALGKKPSVGGYQSTLESDVTHIQNRLFRNKNGSITSFQTIFLPMDDLSDPSAVAVFNHLDGKLVLS
RAQAAKNIFPAFDPLASSTNAIDPKIIGERHYNAIIETKKVLKAYKDLEDVILILGFDELDAESKIIVKKALQLEMFFTQ
NFFMTEHFTKAPGQFVPLKETVESVIRILEGKYLKQSPDVFAYIGSNKDISQDH

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=453, Percent_Identity=39.0728476821192, Blast_Score=328, Evalue=5e-90,
Organism=Homo sapiens, GI19913424, Length=328, Percent_Identity=25.609756097561, Blast_Score=93, Evalue=6e-19,
Organism=Homo sapiens, GI19913426, Length=414, Percent_Identity=21.4975845410628, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI19913428, Length=394, Percent_Identity=21.5736040609137, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI50345984, Length=289, Percent_Identity=24.2214532871972, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI4757810, Length=289, Percent_Identity=24.2214532871972, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1790170, Length=452, Percent_Identity=38.0530973451327, Blast_Score=318, Evalue=4e-88,
Organism=Escherichia coli, GI1788251, Length=338, Percent_Identity=26.6272189349112, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1790172, Length=356, Percent_Identity=22.1910112359551, Blast_Score=75, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI25144756, Length=467, Percent_Identity=38.9721627408994, Blast_Score=317, Evalue=9e-87,
Organism=Caenorhabditis elegans, GI17565854, Length=326, Percent_Identity=26.9938650306748, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17570191, Length=367, Percent_Identity=23.7057220708447, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17510931, Length=398, Percent_Identity=21.8592964824121, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71988080, Length=374, Percent_Identity=21.9251336898396, Blast_Score=66, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71988063, Length=374, Percent_Identity=21.9251336898396, Blast_Score=66, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322581, Length=453, Percent_Identity=39.0728476821192, Blast_Score=324, Evalue=2e-89,
Organism=Saccharomyces cerevisiae, GI6319603, Length=286, Percent_Identity=24.4755244755245, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320016, Length=269, Percent_Identity=26.3940520446097, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28574560, Length=454, Percent_Identity=39.8678414096916, Blast_Score=327, Evalue=7e-90,
Organism=Drosophila melanogaster, GI24638766, Length=462, Percent_Identity=39.3939393939394, Blast_Score=327, Evalue=1e-89,
Organism=Drosophila melanogaster, GI20129479, Length=321, Percent_Identity=26.1682242990654, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24583992, Length=398, Percent_Identity=24.3718592964824, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24583988, Length=423, Percent_Identity=24.5862884160757, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24583986, Length=423, Percent_Identity=24.5862884160757, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24583984, Length=423, Percent_Identity=24.5862884160757, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI281361666, Length=331, Percent_Identity=24.773413897281, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24646341, Length=331, Percent_Identity=24.773413897281, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI17136796, Length=331, Percent_Identity=24.773413897281, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24658560, Length=374, Percent_Identity=22.9946524064171, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50713; Mature: 50713

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNGRVIKISDIVEIEFKNSLPALNHLLTTHDGNTFLLVKRLVDATHARAIVVYASKDLA
CCCCEEEEEEEEEEEEECCCCCHHHHHEEECCCCEEEEHHHHHCCCCCCEEEEEECCCCE
INDIVINTNKSFMVPVGNDSKNNIYNFWGHPLLETNKTPKYVEMNSTILNERYVDKSIEI
EEEEEEECCCEEEEECCCCCCCCCEEECCCCEECCCCCCCEEECCCHHHHHHHHCCHHHH
VETGIKAIDFFMPILKGYKLGIFGGAGVGKTVLMKEIIFNLNRHKQANSNIFIGSGERSR
HHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCHH
EAIELYNELTASNLMPNSVMFISKMNEAPGARTSIVPIGITAAEYLRDQNKENVLLFIDN
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCHHHHHHHCCCCCCEEEEHHH
IYRFIQAENEVSTALGKKPSVGGYQSTLESDVTHIQNRLFRNKNGSITSFQTIFLPMDDL
HHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCC
SDPSAVAVFNHLDGKLVLSRAQAAKNIFPAFDPLASSTNAIDPKIIGERHYNAIIETKKV
CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHH
LKAYKDLEDVILILGFDELDAESKIIVKKALQLEMFFTQNFFMTEHFTKAPGQFVPLKET
HHHHHCHHHEEEEEECCCCCCCCHHHHHHHHHEEEEECCCEEEEHHHHCCCCCEECHHHH
VESVIRILEGKYLKQSPDVFAYIGSNKDISQDH
HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MNNGRVIKISDIVEIEFKNSLPALNHLLTTHDGNTFLLVKRLVDATHARAIVVYASKDLA
CCCCEEEEEEEEEEEEECCCCCHHHHHEEECCCCEEEEHHHHHCCCCCCEEEEEECCCCE
INDIVINTNKSFMVPVGNDSKNNIYNFWGHPLLETNKTPKYVEMNSTILNERYVDKSIEI
EEEEEEECCCEEEEECCCCCCCCCEEECCCCEECCCCCCCEEECCCHHHHHHHHCCHHHH
VETGIKAIDFFMPILKGYKLGIFGGAGVGKTVLMKEIIFNLNRHKQANSNIFIGSGERSR
HHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCHH
EAIELYNELTASNLMPNSVMFISKMNEAPGARTSIVPIGITAAEYLRDQNKENVLLFIDN
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCHHHHHHHCCCCCCEEEEHHH
IYRFIQAENEVSTALGKKPSVGGYQSTLESDVTHIQNRLFRNKNGSITSFQTIFLPMDDL
HHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCC
SDPSAVAVFNHLDGKLVLSRAQAAKNIFPAFDPLASSTNAIDPKIIGERHYNAIIETKKV
CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHH
LKAYKDLEDVILILGFDELDAESKIIVKKALQLEMFFTQNFFMTEHFTKAPGQFVPLKET
HHHHHCHHHEEEEEECCCCCCCCHHHHHHHHHEEEEECCCEEEEHHHHCCCCCEECHHHH
VESVIRILEGKYLKQSPDVFAYIGSNKDISQDH
HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11353084 [H]