Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
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Accession | NC_010503 |
Length | 751,679 |
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The map label for this gene is atpD2 [H]
Identifier: 170762398
GI number: 170762398
Start: 64906
End: 66270
Strand: Direct
Name: atpD2 [H]
Synonym: UPA3_0053
Alternate gene names: 170762398
Gene position: 64906-66270 (Clockwise)
Preceding gene: 170762321
Following gene: 170762141
Centisome position: 8.63
GC content: 28.5
Gene sequence:
>1365_bases ATGAATAACGGCCGAGTTATAAAAATCTGATCAGATATTGTCGAAATTGAATTTAAAAACAGCTTACCAGCTTTAAATCA CTTATTAACAACTCATGATGGCAATACTTTCTTATTAGTTAAAAGATTAGTTGATGCTACACATGCGAGAGCAATTGTTG TTTATGCATCAAAAGATTTAGCAATTAATGATATTGTTATTAATACAAACAAAAGTTTTATGGTCCCAGTTGGTAATGAT TCAAAAAATAATATTTATAATTTTTGGGGACATCCTTTATTAGAAACTAATAAAACACCTAAATATGTTGAAATGAATTC AACAATTTTAAACGAGCGATATGTTGATAAAAGTATAGAAATTGTAGAGACAGGAATTAAAGCAATTGATTTTTTTATGC CAATTCTAAAAGGATATAAATTAGGAATCTTTGGTGGTGCTGGAGTTGGTAAAACAGTTTTAATGAAAGAAATCATTTTT AACTTAAACAGACATAAACAAGCAAATTCAAATATTTTTATTGGTTCAGGAGAGCGTTCACGTGAAGCAATTGAATTATA TAATGAATTGACTGCTTCTAATTTAATGCCTAATTCAGTAATGTTTATTTCTAAGATGAATGAAGCTCCTGGTGCACGTA CTTCAATTGTACCAATTGGAATTACTGCTGCTGAATATTTACGTGATCAAAACAAAGAAAATGTTTTATTGTTTATTGAT AATATTTATCGTTTTATTCAAGCTGAAAATGAAGTTTCTACTGCATTAGGTAAAAAACCGTCTGTTGGAGGTTATCAATC AACACTAGAAAGTGATGTTACACATATTCAAAATCGATTATTTAGAAATAAAAATGGATCAATTACCTCATTTCAAACAA TTTTTTTGCCAATGGATGATTTAAGTGATCCATCAGCTGTCGCTGTATTTAATCATTTAGATGGAAAATTAGTATTATCG CGAGCACAAGCTGCTAAAAATATTTTTCCAGCATTTGATCCATTAGCAAGCTCAACAAACGCTATTGATCCTAAAATTAT TGGTGAACGTCATTATAATGCAATTATCGAAACTAAAAAAGTTTTAAAAGCTTATAAAGATCTAGAAGATGTTATTTTAA TTTTAGGTTTTGATGAACTAGATGCTGAAAGTAAAATTATTGTTAAAAAAGCTTTACAGCTAGAAATGTTCTTTACACAA AACTTTTTTATGACTGAACATTTCACAAAAGCTCCTGGTCAGTTTGTTCCATTAAAAGAGACTGTTGAAAGTGTAATTCG TATTTTAGAAGGTAAATATTTAAAACAAAGTCCAGATGTTTTTGCCTATATTGGTTCAAATAAGGATATTTCTCAAGATC ATTAA
Upstream 100 bases:
>100_bases ATTACTTAAATTTAAATTGAGAAGTTGAATTAGAACATAGTTTTATTCCTTTACAAAATGAGTTTTTAATGAATGTAGCA AAATTTTTAGGAGATAAATA
Downstream 100 bases:
>100_bases TAATTATTAATTTATATTAAATTTAAACCTTGGTAACTATATTAATTACCGAGGTTTTTTATTAAAATGTTCACCATTAA TATGTTTTGTTTAGTTTCAA
Product: F0F1 ATP synthase subunit beta
Products: NA
Alternate protein names: ATP synthase F1 sector subunit beta 2; F-ATPase subunit beta 2 [H]
Number of amino acids: Translated: 454; Mature: 454
Protein sequence:
>454_residues MNNGRVIKIWSDIVEIEFKNSLPALNHLLTTHDGNTFLLVKRLVDATHARAIVVYASKDLAINDIVINTNKSFMVPVGND SKNNIYNFWGHPLLETNKTPKYVEMNSTILNERYVDKSIEIVETGIKAIDFFMPILKGYKLGIFGGAGVGKTVLMKEIIF NLNRHKQANSNIFIGSGERSREAIELYNELTASNLMPNSVMFISKMNEAPGARTSIVPIGITAAEYLRDQNKENVLLFID NIYRFIQAENEVSTALGKKPSVGGYQSTLESDVTHIQNRLFRNKNGSITSFQTIFLPMDDLSDPSAVAVFNHLDGKLVLS RAQAAKNIFPAFDPLASSTNAIDPKIIGERHYNAIIETKKVLKAYKDLEDVILILGFDELDAESKIIVKKALQLEMFFTQ NFFMTEHFTKAPGQFVPLKETVESVIRILEGKYLKQSPDVFAYIGSNKDISQDH
Sequences:
>Translated_454_residues MNNGRVIKI*SDIVEIEFKNSLPALNHLLTTHDGNTFLLVKRLVDATHARAIVVYASKDLAINDIVINTNKSFMVPVGND SKNNIYNFWGHPLLETNKTPKYVEMNSTILNERYVDKSIEIVETGIKAIDFFMPILKGYKLGIFGGAGVGKTVLMKEIIF NLNRHKQANSNIFIGSGERSREAIELYNELTASNLMPNSVMFISKMNEAPGARTSIVPIGITAAEYLRDQNKENVLLFID NIYRFIQAENEVSTALGKKPSVGGYQSTLESDVTHIQNRLFRNKNGSITSFQTIFLPMDDLSDPSAVAVFNHLDGKLVLS RAQAAKNIFPAFDPLASSTNAIDPKIIGERHYNAIIETKKVLKAYKDLEDVILILGFDELDAESKIIVKKALQLEMFFTQ NFFMTEHFTKAPGQFVPLKETVESVIRILEGKYLKQSPDVFAYIGSNKDISQDH >Mature_454_residues MNNGRVIKI*SDIVEIEFKNSLPALNHLLTTHDGNTFLLVKRLVDATHARAIVVYASKDLAINDIVINTNKSFMVPVGND SKNNIYNFWGHPLLETNKTPKYVEMNSTILNERYVDKSIEIVETGIKAIDFFMPILKGYKLGIFGGAGVGKTVLMKEIIF NLNRHKQANSNIFIGSGERSREAIELYNELTASNLMPNSVMFISKMNEAPGARTSIVPIGITAAEYLRDQNKENVLLFID NIYRFIQAENEVSTALGKKPSVGGYQSTLESDVTHIQNRLFRNKNGSITSFQTIFLPMDDLSDPSAVAVFNHLDGKLVLS RAQAAKNIFPAFDPLASSTNAIDPKIIGERHYNAIIETKKVLKAYKDLEDVILILGFDELDAESKIIVKKALQLEMFFTQ NFFMTEHFTKAPGQFVPLKETVESVIRILEGKYLKQSPDVFAYIGSNKDISQDH
Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]
COG id: COG0055
COG function: function code C; F0F1-type ATP synthase, beta subunit
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATPase alpha/beta chains family [H]
Homologues:
Organism=Homo sapiens, GI32189394, Length=453, Percent_Identity=39.0728476821192, Blast_Score=328, Evalue=5e-90, Organism=Homo sapiens, GI19913424, Length=328, Percent_Identity=25.609756097561, Blast_Score=93, Evalue=6e-19, Organism=Homo sapiens, GI19913426, Length=414, Percent_Identity=21.4975845410628, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI19913428, Length=394, Percent_Identity=21.5736040609137, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI50345984, Length=289, Percent_Identity=24.2214532871972, Blast_Score=67, Evalue=4e-11, Organism=Homo sapiens, GI4757810, Length=289, Percent_Identity=24.2214532871972, Blast_Score=67, Evalue=4e-11, Organism=Escherichia coli, GI1790170, Length=452, Percent_Identity=38.0530973451327, Blast_Score=318, Evalue=4e-88, Organism=Escherichia coli, GI1788251, Length=338, Percent_Identity=26.6272189349112, Blast_Score=112, Evalue=5e-26, Organism=Escherichia coli, GI1790172, Length=356, Percent_Identity=22.1910112359551, Blast_Score=75, Evalue=7e-15, Organism=Caenorhabditis elegans, GI25144756, Length=467, Percent_Identity=38.9721627408994, Blast_Score=317, Evalue=9e-87, Organism=Caenorhabditis elegans, GI17565854, Length=326, Percent_Identity=26.9938650306748, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17570191, Length=367, Percent_Identity=23.7057220708447, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17510931, Length=398, Percent_Identity=21.8592964824121, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71988080, Length=374, Percent_Identity=21.9251336898396, Blast_Score=66, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71988063, Length=374, Percent_Identity=21.9251336898396, Blast_Score=66, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322581, Length=453, Percent_Identity=39.0728476821192, Blast_Score=324, Evalue=2e-89, Organism=Saccharomyces cerevisiae, GI6319603, Length=286, Percent_Identity=24.4755244755245, Blast_Score=86, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6320016, Length=269, Percent_Identity=26.3940520446097, Blast_Score=68, Evalue=3e-12, Organism=Drosophila melanogaster, GI28574560, Length=454, Percent_Identity=39.8678414096916, Blast_Score=327, Evalue=7e-90, Organism=Drosophila melanogaster, GI24638766, Length=462, Percent_Identity=39.3939393939394, Blast_Score=327, Evalue=1e-89, Organism=Drosophila melanogaster, GI20129479, Length=321, Percent_Identity=26.1682242990654, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI24583992, Length=398, Percent_Identity=24.3718592964824, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24583988, Length=423, Percent_Identity=24.5862884160757, Blast_Score=93, Evalue=3e-19, Organism=Drosophila melanogaster, GI24583986, Length=423, Percent_Identity=24.5862884160757, Blast_Score=93, Evalue=3e-19, Organism=Drosophila melanogaster, GI24583984, Length=423, Percent_Identity=24.5862884160757, Blast_Score=93, Evalue=3e-19, Organism=Drosophila melanogaster, GI281361666, Length=331, Percent_Identity=24.773413897281, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI24646341, Length=331, Percent_Identity=24.773413897281, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI17136796, Length=331, Percent_Identity=24.773413897281, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI24658560, Length=374, Percent_Identity=22.9946524064171, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020003 - InterPro: IPR000194 - InterPro: IPR003593 - InterPro: IPR005722 - InterPro: IPR018118 - InterPro: IPR000793 [H]
Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C [H]
EC number: =3.6.3.14 [H]
Molecular weight: Translated: 50713; Mature: 50713
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNGRVIKISDIVEIEFKNSLPALNHLLTTHDGNTFLLVKRLVDATHARAIVVYASKDLA CCCCEEEEEEEEEEEEECCCCCHHHHHEEECCCCEEEEHHHHHCCCCCCEEEEEECCCCE INDIVINTNKSFMVPVGNDSKNNIYNFWGHPLLETNKTPKYVEMNSTILNERYVDKSIEI EEEEEEECCCEEEEECCCCCCCCCEEECCCCEECCCCCCCEEECCCHHHHHHHHCCHHHH VETGIKAIDFFMPILKGYKLGIFGGAGVGKTVLMKEIIFNLNRHKQANSNIFIGSGERSR HHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCHH EAIELYNELTASNLMPNSVMFISKMNEAPGARTSIVPIGITAAEYLRDQNKENVLLFIDN HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCHHHHHHHCCCCCCEEEEHHH IYRFIQAENEVSTALGKKPSVGGYQSTLESDVTHIQNRLFRNKNGSITSFQTIFLPMDDL HHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCC SDPSAVAVFNHLDGKLVLSRAQAAKNIFPAFDPLASSTNAIDPKIIGERHYNAIIETKKV CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHH LKAYKDLEDVILILGFDELDAESKIIVKKALQLEMFFTQNFFMTEHFTKAPGQFVPLKET HHHHHCHHHEEEEEECCCCCCCCHHHHHHHHHEEEEECCCEEEEHHHHCCCCCEECHHHH VESVIRILEGKYLKQSPDVFAYIGSNKDISQDH HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC >Mature Secondary Structure MNNGRVIKISDIVEIEFKNSLPALNHLLTTHDGNTFLLVKRLVDATHARAIVVYASKDLA CCCCEEEEEEEEEEEEECCCCCHHHHHEEECCCCEEEEHHHHHCCCCCCEEEEEECCCCE INDIVINTNKSFMVPVGNDSKNNIYNFWGHPLLETNKTPKYVEMNSTILNERYVDKSIEI EEEEEEECCCEEEEECCCCCCCCCEEECCCCEECCCCCCCEEECCCHHHHHHHHCCHHHH VETGIKAIDFFMPILKGYKLGIFGGAGVGKTVLMKEIIFNLNRHKQANSNIFIGSGERSR HHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCHH EAIELYNELTASNLMPNSVMFISKMNEAPGARTSIVPIGITAAEYLRDQNKENVLLFIDN HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCHHHHHHHCCCCCCEEEEHHH IYRFIQAENEVSTALGKKPSVGGYQSTLESDVTHIQNRLFRNKNGSITSFQTIFLPMDDL HHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCC SDPSAVAVFNHLDGKLVLSRAQAAKNIFPAFDPLASSTNAIDPKIIGERHYNAIIETKKV CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHH LKAYKDLEDVILILGFDELDAESKIIVKKALQLEMFFTQNFFMTEHFTKAPGQFVPLKET HHHHHCHHHEEEEEECCCCCCCCHHHHHHHHHEEEEECCCEEEEHHHHCCCCCEECHHHH VESVIRILEGKYLKQSPDVFAYIGSNKDISQDH HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11353084 [H]