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The map label for this gene is rplW

Identifier: 170762276

GI number: 170762276

Start: 277531

End: 277848

Strand: Direct

Name: rplW

Synonym: UPA3_0241

Alternate gene names: 170762276

Gene position: 277531-277848 (Clockwise)

Preceding gene: 170762012

Following gene: 170762230

Centisome position: 36.92

GC content: 31.13

Gene sequence:

>318_bases
ATGGAATTAACAAGAGTTATTTTACATCCATATACGACAGAAAAAACTTATTCTATTCGTAATAAAAGCGAGCATGAAAC
ATTAACTTTTATTGTTGATAAAAATGCTAATAAATACCAAATTCGTGAAGCATTTATTGCGATTTTTGGTTTAAAACCAC
TTAAAATTCGTACTACAAATCGTCGTCCTGCAAAAATTCGTACTTCAACAGCTAGACCAGGATATACAAAAGCAAAAAAA
ATTGCTTATGTAGTAATGCCAGTAGGTGTTAAAGTAGCTGTAAGTAAAGAAGAAGTTGAAGCAGCAAACGCAAAGTAG

Upstream 100 bases:

>100_bases
TATGATACCAAGTTTCAGTTCGTGATTTAATGCATGCAAATGTTGTTGTTGTGGCTGAAGAAGCATTTACAAATTACGCA
AGAAAGGTAAGTAAATAATC

Downstream 100 bases:

>100_bases
TTTAAAACAAAATTAAAAATAACAGTCGAAAAGCAAATTAGAAAGAGGCAATTATGGCAGTTAAACGTATTAAAAACCAT
AGTAGTGGTAAAAGACAAAC

Product: 50S ribosomal protein L23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MELTRVILHPYTTEKTYSIRNKSEHETLTFIVDKNANKYQIREAFIAIFGLKPLKIRTTNRRPAKIRTSTARPGYTKAKK
IAYVVMPVGVKVAVSKEEVEAANAK

Sequences:

>Translated_105_residues
MELTRVILHPYTTEKTYSIRNKSEHETLTFIVDKNANKYQIREAFIAIFGLKPLKIRTTNRRPAKIRTSTARPGYTKAKK
IAYVVMPVGVKVAVSKEEVEAANAK
>Mature_105_residues
MELTRVILHPYTTEKTYSIRNKSEHETLTFIVDKNANKYQIREAFIAIFGLKPLKIRTTNRRPAKIRTSTARPGYTKAKK
IAYVVMPVGVKVAVSKEEVEAANAK

Specific function: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL23_UREP2 (B1AIM2)

Other databases:

- EMBL:   CP000942
- RefSeq:   YP_001752316.1
- ProteinModelPortal:   B1AIM2
- SMR:   B1AIM2
- GeneID:   6155537
- GenomeReviews:   CP000942_GR
- KEGG:   upa:UPA3_0241
- HOGENOM:   HBG439330
- OMA:   AKKIAYI
- ProtClustDB:   PRK05738
- BioCyc:   UPAR505682:UPA3_0241-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01369_B
- InterPro:   IPR012677
- InterPro:   IPR012678
- InterPro:   IPR013025
- Gene3D:   G3DSA:3.30.70.330

Pfam domain/function: PF00276 Ribosomal_L23; SSF54189 L23_L15e_core

EC number: NA

Molecular weight: Translated: 11950; Mature: 11950

Theoretical pI: Translated: 10.82; Mature: 10.82

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELTRVILHPYTTEKTYSIRNKSEHETLTFIVDKNANKYQIREAFIAIFGLKPLKIRTTN
CCCEEEEECCCCCCEEEEECCCCCCCEEEEEEECCCCEEHHHHHEEHEECCCEEEEEECC
RRPAKIRTSTARPGYTKAKKIAYVVMPVGVKVAVSKEEVEAANAK
CCCCEEEECCCCCCCCCCCEEEEEEEECCEEEEECHHHCCCCCCC
>Mature Secondary Structure
MELTRVILHPYTTEKTYSIRNKSEHETLTFIVDKNANKYQIREAFIAIFGLKPLKIRTTN
CCCEEEEECCCCCCEEEEECCCCCCCEEEEEEECCCCEEHHHHHEEHEECCCEEEEEECC
RRPAKIRTSTARPGYTKAKKIAYVVMPVGVKVAVSKEEVEAANAK
CCCCEEEECCCCCCCCCCCEEEEEEEECCEEEEECHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA