Click here to switch to the map view.

The map label for this gene is rplJ

Identifier: 170762262

GI number: 170762262

Start: 7980

End: 8480

Strand: Direct

Name: rplJ

Synonym: UPA3_0010

Alternate gene names: 170762262

Gene position: 7980-8480 (Clockwise)

Preceding gene: 170762214

Following gene: 170762170

Centisome position: 1.06

GC content: 32.34

Gene sequence:

>501_bases
ATGGCAAATGTTAGACCAAGTGTTGTTTTTAAACAACAAGAAGTCAACCATATGGCAGATATACTAAAAAATTCAAAATC
TTTTATTGTTTTTGAATATCATGGATTAACTGCTGCTAACATTTTAGCGTTAAGAAATGTTTTACATTCATCAAATTCTA
AATTATATGTTTTAAAAAATAATATTACAGCACGTGCTTTTGAAAAAGCTGGTGTTAGTGGATTTGAAAATCAATTAACA
GGACCTAACGCAGTTGCTGTTGCAATGGACGATGAAATTGCTGCGATTAAAGCAGTAAATGATGTAGCTAAAGAATTTGA
TTTTGTCAAAATTAAAGGTGCATATCTTGAAAACAAATTTGCAGATACTCACAAAATCGATCAACTTGCTGCAATTCCTG
GCCGTGAAGGTCTATACTCAATGCTACTTTCTTGCTTCACAGCACCATTACGTAATGTGATGTATGGTTTAAAAGCTGTA
GCTGAGCAAAAAGGTGAATAA

Upstream 100 bases:

>100_bases
AGAAAGTAACTGTTTATTAATTAAACTTAATTTGTTACCGAGGTTTATATTAAACAAAAATGCATGTTGCAAACACATAT
TCTAAATAAGAGGTATAAAT

Downstream 100 bases:

>100_bases
AATAATATTATTGGAGAATTTAATATGTCAAAATTAACAATTGAACAATTTATTGCTGCGATTAAAGAAATGTCAATGCT
AGAATTAAACGATTTGGTTA

Product: 50S ribosomal protein L10

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MANVRPSVVFKQQEVNHMADILKNSKSFIVFEYHGLTAANILALRNVLHSSNSKLYVLKNNITARAFEKAGVSGFENQLT
GPNAVAVAMDDEIAAIKAVNDVAKEFDFVKIKGAYLENKFADTHKIDQLAAIPGREGLYSMLLSCFTAPLRNVMYGLKAV
AEQKGE

Sequences:

>Translated_166_residues
MANVRPSVVFKQQEVNHMADILKNSKSFIVFEYHGLTAANILALRNVLHSSNSKLYVLKNNITARAFEKAGVSGFENQLT
GPNAVAVAMDDEIAAIKAVNDVAKEFDFVKIKGAYLENKFADTHKIDQLAAIPGREGLYSMLLSCFTAPLRNVMYGLKAV
AEQKGE
>Mature_165_residues
ANVRPSVVFKQQEVNHMADILKNSKSFIVFEYHGLTAANILALRNVLHSSNSKLYVLKNNITARAFEKAGVSGFENQLTG
PNAVAVAMDDEIAAIKAVNDVAKEFDFVKIKGAYLENKFADTHKIDQLAAIPGREGLYSMLLSCFTAPLRNVMYGLKAVA
EQKGE

Specific function: Unknown

COG id: COG0244

COG function: function code J; Ribosomal protein L10

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL10_UREP2 (B1AHZ6)

Other databases:

- EMBL:   CP000942
- RefSeq:   YP_001752090.1
- ProteinModelPortal:   B1AHZ6
- SMR:   B1AHZ6
- GeneID:   6155658
- GenomeReviews:   CP000942_GR
- KEGG:   upa:UPA3_0010
- HOGENOM:   HBG597359
- OMA:   DYKGLSV
- ProtClustDB:   PRK00099
- BioCyc:   UPAR505682:UPA3_0010-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00362
- InterPro:   IPR022973
- InterPro:   IPR001790
- InterPro:   IPR002363

Pfam domain/function: PF00466 Ribosomal_L10

EC number: NA

Molecular weight: Translated: 18220; Mature: 18089

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: PS01109 RIBOSOMAL_L10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANVRPSVVFKQQEVNHMADILKNSKSFIVFEYHGLTAANILALRNVLHSSNSKLYVLKN
CCCCCCHHEEHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEC
NITARAFEKAGVSGFENQLTGPNAVAVAMDDEIAAIKAVNDVAKEFDFVKIKGAYLENKF
CCCHHHHHHCCCCCCHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECHHHHCCC
ADTHKIDQLAAIPGREGLYSMLLSCFTAPLRNVMYGLKAVAEQKGE
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANVRPSVVFKQQEVNHMADILKNSKSFIVFEYHGLTAANILALRNVLHSSNSKLYVLKN
CCCCCHHEEHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEC
NITARAFEKAGVSGFENQLTGPNAVAVAMDDEIAAIKAVNDVAKEFDFVKIKGAYLENKF
CCCHHHHHHCCCCCCHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECHHHHCCC
ADTHKIDQLAAIPGREGLYSMLLSCFTAPLRNVMYGLKAVAEQKGE
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA