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The map label for this gene is atpD

Identifier: 170762163

GI number: 170762163

Start: 169967

End: 171361

Strand: Reverse

Name: atpD

Synonym: UPA3_0135

Alternate gene names: 170762163

Gene position: 171361-169967 (Counterclockwise)

Preceding gene: 170762393

Following gene: 170762175

Centisome position: 22.8

GC content: 36.2

Gene sequence:

>1395_bases
ATGACAGAAGTTAAAAAAGGTAAAATTAACCAAATTTTGGGCCCTGTTGTTGACGTGCGTTTTCCCTCTGAATGATTGCC
TGAAATTAACACTGCTTTAGAATTAAACAATCATGGTTCTAAATTAGTACTTGAGGTTTCTCAATTAGTTGGTGATAATA
TTGCAAGATGTATTGCAATGGATACAACTGATGGACTAGTACGTGGACAAGAGGTAATTAATACTCAAAAACCAATCACA
ATGCCTGTTGGTAAACAAGTACTTGGACGTATGTTCAATGTAACTGGTGATCCAATTGATGAACAACCTGCACCAACAGG
TAAACGTATGCCAATTCATCGTCCTGCACCTTCATTCGCCGAACAAGCAGAATCAATTGAAATCCTAGAAACGGGAATTA
AAGTTGTCGACTTACTTGTACCTTTTGCAAAGGGTGGTAAGATCGGTTTATTTGGTGGTGCTGGAGTTGGTAAAACAGTT
TTAATGCAAGAATTAATTCATAACATCGCTAAAAATCATGGTGGTTTATCAGTTTTTGCTGGAGTTGGAGAAAGAACACG
TGAAGGAAATGATTTATACTATGAAATGGCTGAGTCAGATGTTTTAGATAAAACAGCTCTTGTCTTTGGACAAATGAATG
AACCACCAGGAGCACGTATGCGCGTCGCATTAAGCGGTTTAACAATGGCTGAAGAATTCCGTGATGCTTTTGGTCAAGAT
GTTTTATTATTTATCGATAACATTTTTAGATTCACACAAGCTGGTTCAGAAGTTTCTGCTTTACTTGGACGAATGCCATC
AGCAGTTGGTTATCAACCAACACTTGCTTTTGAAATGGGTCAATTACAAGAACGAATTACATCAACTAAAAAAGGATCAA
TTACATCGGTTCAAGCTGTTTATGTTCCAGCTGATGACTTAACTGACCCCGCACCAGCAACAACTTTTTCACACTTAGAT
GCTAAAGTTGTTTTAGATAGAGCTATTGCCTCATTGGGATTATATCCAGCAATTTCACCACTACAATCAACAAGTCGTTT
ATTAGATCCATTAGTTGTTGGTGTAAAACACTACAGTGTTGCGCGTCGTGTAATTGAAATTTTACAAAGATTTATGGAAT
TACAAGATATTATTGCAATTCTTGGAATGGATGAATTAAGCGAAGAAGATCGTCAATTAGTAATGCGCGCACGTAAAGTA
CGTAACTACTTATCACAGCCAAGCCACGTTGCTGAAAAATTCTCTGGTCAACCTGGATTATCAGTTAAACTTGAAGATAC
TATTGAAGGATTTAGAAAAATTCTTGATGGTGAATGTGATGATATTCATGAACAACATTTCTTATATGTTGGTAAAATTG
ATGACGTTTTTGAAAAAGCAGCAAAAAATAAATAA

Upstream 100 bases:

>100_bases
TAATTTACAATACATTACGCCAAGGTAAAATTACTCGTGAAATTACTGAAATTGTTGCTGGTAGTGATGATTAGAAACTA
TAAACAATAAGGAGCAAAAT

Downstream 100 bases:

>100_bases
TGGCTAATTTAACTAAATTAAAAATTGTTACACCTTATGCACAAATTTTAGAAAAAGATGTGTATAGTGTTGAATTAAAA
ACATCAGAAGGACGAATTAC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MTEVKKGKINQILGPVVDVRFPSEWLPEINTALELNNHGSKLVLEVSQLVGDNIARCIAMDTTDGLVRGQEVINTQKPIT
MPVGKQVLGRMFNVTGDPIDEQPAPTGKRMPIHRPAPSFAEQAESIEILETGIKVVDLLVPFAKGGKIGLFGGAGVGKTV
LMQELIHNIAKNHGGLSVFAGVGERTREGNDLYYEMAESDVLDKTALVFGQMNEPPGARMRVALSGLTMAEEFRDAFGQD
VLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAFEMGQLQERITSTKKGSITSVQAVYVPADDLTDPAPATTFSHLD
AKVVLDRAIASLGLYPAISPLQSTSRLLDPLVVGVKHYSVARRVIEILQRFMELQDIIAILGMDELSEEDRQLVMRARKV
RNYLSQPSHVAEKFSGQPGLSVKLEDTIEGFRKILDGECDDIHEQHFLYVGKIDDVFEKAAKNK

Sequences:

>Translated_464_residues
MTEVKKGKINQILGPVVDVRFPSE*LPEINTALELNNHGSKLVLEVSQLVGDNIARCIAMDTTDGLVRGQEVINTQKPIT
MPVGKQVLGRMFNVTGDPIDEQPAPTGKRMPIHRPAPSFAEQAESIEILETGIKVVDLLVPFAKGGKIGLFGGAGVGKTV
LMQELIHNIAKNHGGLSVFAGVGERTREGNDLYYEMAESDVLDKTALVFGQMNEPPGARMRVALSGLTMAEEFRDAFGQD
VLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAFEMGQLQERITSTKKGSITSVQAVYVPADDLTDPAPATTFSHLD
AKVVLDRAIASLGLYPAISPLQSTSRLLDPLVVGVKHYSVARRVIEILQRFMELQDIIAILGMDELSEEDRQLVMRARKV
RNYLSQPSHVAEKFSGQPGLSVKLEDTIEGFRKILDGECDDIHEQHFLYVGKIDDVFEKAAKNK
>Mature_463_residues
TEVKKGKINQILGPVVDVRFPSE*LPEINTALELNNHGSKLVLEVSQLVGDNIARCIAMDTTDGLVRGQEVINTQKPITM
PVGKQVLGRMFNVTGDPIDEQPAPTGKRMPIHRPAPSFAEQAESIEILETGIKVVDLLVPFAKGGKIGLFGGAGVGKTVL
MQELIHNIAKNHGGLSVFAGVGERTREGNDLYYEMAESDVLDKTALVFGQMNEPPGARMRVALSGLTMAEEFRDAFGQDV
LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAFEMGQLQERITSTKKGSITSVQAVYVPADDLTDPAPATTFSHLDA
KVVLDRAIASLGLYPAISPLQSTSRLLDPLVVGVKHYSVARRVIEILQRFMELQDIIAILGMDELSEEDRQLVMRARKVR
NYLSQPSHVAEKFSGQPGLSVKLEDTIEGFRKILDGECDDIHEQHFLYVGKIDDVFEKAAKNK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=462, Percent_Identity=66.017316017316, Blast_Score=598, Evalue=1e-171,
Organism=Homo sapiens, GI19913424, Length=327, Percent_Identity=27.5229357798165, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI19913428, Length=429, Percent_Identity=24.2424242424242, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI19913426, Length=349, Percent_Identity=24.0687679083095, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI50345984, Length=298, Percent_Identity=25.8389261744966, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI4757810, Length=298, Percent_Identity=25.8389261744966, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1790170, Length=457, Percent_Identity=66.0831509846827, Blast_Score=598, Evalue=1e-172,
Organism=Escherichia coli, GI1788251, Length=368, Percent_Identity=29.0760869565217, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1790172, Length=298, Percent_Identity=25.503355704698, Blast_Score=99, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI25144756, Length=460, Percent_Identity=66.0869565217391, Blast_Score=598, Evalue=1e-171,
Organism=Caenorhabditis elegans, GI17565854, Length=322, Percent_Identity=29.5031055900621, Blast_Score=121, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI17570191, Length=423, Percent_Identity=24.3498817966903, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17510931, Length=355, Percent_Identity=25.0704225352113, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71988080, Length=399, Percent_Identity=24.812030075188, Blast_Score=95, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI71988063, Length=399, Percent_Identity=24.812030075188, Blast_Score=95, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=412, Percent_Identity=23.7864077669903, Blast_Score=83, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=456, Percent_Identity=67.1052631578947, Blast_Score=606, Evalue=1e-174,
Organism=Saccharomyces cerevisiae, GI6319603, Length=362, Percent_Identity=26.5193370165746, Blast_Score=101, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6319370, Length=370, Percent_Identity=24.0540540540541, Blast_Score=87, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6320016, Length=215, Percent_Identity=28.8372093023256, Blast_Score=82, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24638766, Length=463, Percent_Identity=66.5226781857451, Blast_Score=598, Evalue=1e-171,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=63.2258064516129, Blast_Score=574, Evalue=1e-164,
Organism=Drosophila melanogaster, GI24583992, Length=330, Percent_Identity=28.4848484848485, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI20129479, Length=322, Percent_Identity=27.3291925465839, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24583988, Length=330, Percent_Identity=28.1818181818182, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24583986, Length=330, Percent_Identity=28.1818181818182, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24583984, Length=330, Percent_Identity=28.1818181818182, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24638768, Length=90, Percent_Identity=54.4444444444444, Blast_Score=99, Evalue=8e-21,
Organism=Drosophila melanogaster, GI281361666, Length=353, Percent_Identity=23.5127478753541, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24646341, Length=353, Percent_Identity=23.5127478753541, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI17136796, Length=353, Percent_Identity=23.5127478753541, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24658560, Length=298, Percent_Identity=25.503355704698, Blast_Score=86, Evalue=4e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50631; Mature: 50500

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEVKKGKINQILGPVVDVRFPSELPEINTALELNNHGSKLVLEVSQLVGDNIARCIAMD
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHEEEC
TTDGLVRGQEVINTQKPITMPVGKQVLGRMFNVTGDPIDEQPAPTGKRMPIHRPAPSFAE
CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
QAESIEILETGIKVVDLLVPFAKGGKIGLFGGAGVGKTVLMQELIHNIAKNHGGLSVFAG
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
VGERTREGNDLYYEMAESDVLDKTALVFGQMNEPPGARMRVALSGLTMAEEFRDAFGQDV
CCCCCCCCCHHEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCHH
LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAFEMGQLQERITSTKKGSITSVQAVY
HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE
VPADDLTDPAPATTFSHLDAKVVLDRAIASLGLYPAISPLQSTSRLLDPLVVGVKHYSVA
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RRVIEILQRFMELQDIIAILGMDELSEEDRQLVMRARKVRNYLSQPSHVAEKFSGQPGLS
HHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCE
VKLEDTIEGFRKILDGECDDIHEQHFLYVGKIDDVFEKAAKNK
EEEHHHHHHHHHHHCCCCCCCCHHHEEEECCHHHHHHHHHCCC
>Mature Secondary Structure 
TEVKKGKINQILGPVVDVRFPSELPEINTALELNNHGSKLVLEVSQLVGDNIARCIAMD
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHEEEC
TTDGLVRGQEVINTQKPITMPVGKQVLGRMFNVTGDPIDEQPAPTGKRMPIHRPAPSFAE
CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
QAESIEILETGIKVVDLLVPFAKGGKIGLFGGAGVGKTVLMQELIHNIAKNHGGLSVFAG
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
VGERTREGNDLYYEMAESDVLDKTALVFGQMNEPPGARMRVALSGLTMAEEFRDAFGQDV
CCCCCCCCCHHEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCHH
LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAFEMGQLQERITSTKKGSITSVQAVY
HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE
VPADDLTDPAPATTFSHLDAKVVLDRAIASLGLYPAISPLQSTSRLLDPLVVGVKHYSVA
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RRVIEILQRFMELQDIIAILGMDELSEEDRQLVMRARKVRNYLSQPSHVAEKFSGQPGLS
HHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCE
VKLEDTIEGFRKILDGECDDIHEQHFLYVGKIDDVFEKAAKNK
EEEHHHHHHHHHHHCCCCCCCCHHHEEEECCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA