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The map label for this gene is secY

Identifier: 170762149

GI number: 170762149

Start: 285680

End: 287095

Strand: Direct

Name: secY

Synonym: UPA3_0258

Alternate gene names: 170762149

Gene position: 285680-287095 (Clockwise)

Preceding gene: 170762257

Following gene: 170762193

Centisome position: 38.01

GC content: 30.79

Gene sequence:

>1416_bases
ATGACTAACAAACAGAAGAAAAAAAATGCTTTTAGACAGTTGTTAATGATCTTTAAAAATAAAAAAGTTTTAGTTGCATT
AATTGTAACTTTAAGTATATTAATCTTGTTTAGAATTGGATCTGTTATCCCAATGCCATACATTAAGTTAAATGGTAATT
TTGGCAATCAAGGTTCATTCTTTTCAATTATTAACTTATTAGGCGGGGGAGGGCTATCACAATTTTCACTCTTCGCAATT
GGGATAGGACCTTATATTACCGCTCAAATTATTATGCAACTTTTATCAAGTGAGCTTGTGCCACCACTCGCCAAATTATC
CAAATCAGGTGAGCGTGGTCGTAAAAAAATTGAAGTGATTACAAGAATCATTACCTTGCCTCTTGCAGTGATGCAAGCTG
TCATTATTATTAATTTAATGACAAGAGCAAATGGATTTATTTCAATTGTTTCAAATGCACCATTTGCTATTGGTTCACCA
TTATTTTATGTAACATACATTTTTTTAATGGTTGGTGGCACTTATATTTCGTTATTTTTAGCTGATCTAATTTCGAAAAA
AGGTGTTGGTAATGGAATTACATTATTAATTCTTACAGGAATTGTTGCTTCATTATTTAATCACTTTATTGCAATTTTTT
CAAATTTAGGTAGTTTAACAAGCAGTAAAGTTTCACAAATTATCGGTTTCATTTTATACATTTTATTCTATATTATGATC
TTAATTGGTGTTGTTTTTGTTAATAATTCAACAAGAAAAATTCCAGTTCAACAAACCGGTCAAGCTCTAATTTTAGATCA
TGAGAAACTACCATTTCTTCCTATTAAAATTATGACAGCAGGAGTAATGCCAGTGATCTTTGCATCATCTGTTTTAGCCA
TTCCTGCACAAGTTGCTGAATTTTTAGATAAACAAAGCATGGGTTATTATGTGATTCATAATTACTTCATTGTTGATTCT
TGAACGGGTCTAGCAATTTATGTTGTTTTAATTTTATTATTTACATTCTTCTTTTCATATGTACAACTTAATCCACCAAA
AATGGCTGAAGATATTAAAAAAGCCGGTCGTTTTATTCCAGGTGTTCAAGTTGGAATGGATACTGAAAAACATATTACAA
AAGTAATTTATCGCGTGAATTGAATTGGTGCACCAATTCTTGCTTTTCTAGCATGCTTGCCTCATTTGGTTGCTTTAGTA
GCTAAAACAATCAATCATGGAATTCCTGTAATTCAACCATCAACAATTTTTGGAGGAACTTCAATTATTATTATGGTTAC
AGCAACGCTTGAATTATGAAATGCAATTAAATCAACATCAACTTCAACATCATACGCTTACCAAAGAAAAGAATTAGAAA
CATCCATTACAGTAAGCGCTGAAAGTGACAAGAGTAGTAAGTCACAAATTTGATAG

Upstream 100 bases:

>100_bases
TTGGAATCAATTAGTAATTCAAAAGCAAAAGCACAAATTTTAGAGTAATAAAAGTTTATAATATATAATTTATTACTAAA
CCAAAATAAGGGGATTAACA

Downstream 100 bases:

>100_bases
AGGTATTTATGAAAATCCTTTTAATTGGCCCCCCAGGGAGTGGTAAGGGAAGTGTTAGTGAATTATTAACTAAAAATAAT
ACATTAAAACATGTTTCCAC

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MTNKQKKKNAFRQLLMIFKNKKVLVALIVTLSILILFRIGSVIPMPYIKLNGNFGNQGSFFSIINLLGGGGLSQFSLFAI
GIGPYITAQIIMQLLSSELVPPLAKLSKSGERGRKKIEVITRIITLPLAVMQAVIIINLMTRANGFISIVSNAPFAIGSP
LFYVTYIFLMVGGTYISLFLADLISKKGVGNGITLLILTGIVASLFNHFIAIFSNLGSLTSSKVSQIIGFILYILFYIMI
LIGVVFVNNSTRKIPVQQTGQALILDHEKLPFLPIKIMTAGVMPVIFASSVLAIPAQVAEFLDKQSMGYYVIHNYFIVDS
WTGLAIYVVLILLFTFFFSYVQLNPPKMAEDIKKAGRFIPGVQVGMDTEKHITKVIYRVNWIGAPILAFLACLPHLVALV
AKTINHGIPVIQPSTIFGGTSIIIMVTATLELWNAIKSTSTSTSYAYQRKELETSITVSAESDKSSKSQIW

Sequences:

>Translated_471_residues
MTNKQKKKNAFRQLLMIFKNKKVLVALIVTLSILILFRIGSVIPMPYIKLNGNFGNQGSFFSIINLLGGGGLSQFSLFAI
GIGPYITAQIIMQLLSSELVPPLAKLSKSGERGRKKIEVITRIITLPLAVMQAVIIINLMTRANGFISIVSNAPFAIGSP
LFYVTYIFLMVGGTYISLFLADLISKKGVGNGITLLILTGIVASLFNHFIAIFSNLGSLTSSKVSQIIGFILYILFYIMI
LIGVVFVNNSTRKIPVQQTGQALILDHEKLPFLPIKIMTAGVMPVIFASSVLAIPAQVAEFLDKQSMGYYVIHNYFIVDS
*TGLAIYVVLILLFTFFFSYVQLNPPKMAEDIKKAGRFIPGVQVGMDTEKHITKVIYRVN*IGAPILAFLACLPHLVALV
AKTINHGIPVIQPSTIFGGTSIIIMVTATLEL*NAIKSTSTSTSYAYQRKELETSITVSAESDKSSKSQI*
>Mature_470_residues
TNKQKKKNAFRQLLMIFKNKKVLVALIVTLSILILFRIGSVIPMPYIKLNGNFGNQGSFFSIINLLGGGGLSQFSLFAIG
IGPYITAQIIMQLLSSELVPPLAKLSKSGERGRKKIEVITRIITLPLAVMQAVIIINLMTRANGFISIVSNAPFAIGSPL
FYVTYIFLMVGGTYISLFLADLISKKGVGNGITLLILTGIVASLFNHFIAIFSNLGSLTSSKVSQIIGFILYILFYIMIL
IGVVFVNNSTRKIPVQQTGQALILDHEKLPFLPIKIMTAGVMPVIFASSVLAIPAQVAEFLDKQSMGYYVIHNYFIVDS*
TGLAIYVVLILLFTFFFSYVQLNPPKMAEDIKKAGRFIPGVQVGMDTEKHITKVIYRVN*IGAPILAFLACLPHLVALVA
KTINHGIPVIQPSTIFGGTSIIIMVTATLEL*NAIKSTSTSTSYAYQRKELETSITVSAESDKSSKSQI*

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=435, Percent_Identity=33.3333333333333, Blast_Score=159, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 50900; Mature: 50769

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKQKKKNAFRQLLMIFKNKKVLVALIVTLSILILFRIGSVIPMPYIKLNGNFGNQGSF
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHH
FSIINLLGGGGLSQFSLFAIGIGPYITAQIIMQLLSSELVPPLAKLSKSGERGRKKIEVI
HHHHHHHCCCCCCHHHHEEECCCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHH
TRIITLPLAVMQAVIIINLMTRANGFISIVSNAPFAIGSPLFYVTYIFLMVGGTYISLFL
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ADLISKKGVGNGITLLILTGIVASLFNHFIAIFSNLGSLTSSKVSQIIGFILYILFYIMI
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LIGVVFVNNSTRKIPVQQTGQALILDHEKLPFLPIKIMTAGVMPVIFASSVLAIPAQVAE
HHHHHHCCCCCCCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLDKQSMGYYVIHNYFIVDSTGLAIYVVLILLFTFFFSYVQLNPPKMAEDIKKAGRFIPG
HHHHCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
VQVGMDTEKHITKVIYRVNIGAPILAFLACLPHLVALVAKTINHGIPVIQPSTIFGGTSI
CEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCEE
IIMVTATLELNAIKSTSTSTSYAYQRKELETSITVSAESDKSSKSQI
EEEEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
TNKQKKKNAFRQLLMIFKNKKVLVALIVTLSILILFRIGSVIPMPYIKLNGNFGNQGSF
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHH
FSIINLLGGGGLSQFSLFAIGIGPYITAQIIMQLLSSELVPPLAKLSKSGERGRKKIEVI
HHHHHHHCCCCCCHHHHEEECCCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHH
TRIITLPLAVMQAVIIINLMTRANGFISIVSNAPFAIGSPLFYVTYIFLMVGGTYISLFL
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ADLISKKGVGNGITLLILTGIVASLFNHFIAIFSNLGSLTSSKVSQIIGFILYILFYIMI
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LIGVVFVNNSTRKIPVQQTGQALILDHEKLPFLPIKIMTAGVMPVIFASSVLAIPAQVAE
HHHHHHCCCCCCCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLDKQSMGYYVIHNYFIVDSTGLAIYVVLILLFTFFFSYVQLNPPKMAEDIKKAGRFIPG
HHHHCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
VQVGMDTEKHITKVIYRVNIGAPILAFLACLPHLVALVAKTINHGIPVIQPSTIFGGTSI
CEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCEE
IIMVTATLELNAIKSTSTSTSYAYQRKELETSITVSAESDKSSKSQI
EEEEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10867916; 12949158 [H]