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The map label for this gene is yrdC [C]

Identifier: 170762116

GI number: 170762116

Start: 3899

End: 4453

Strand: Direct

Name: yrdC [C]

Synonym: UPA3_0005

Alternate gene names: 170762116

Gene position: 3899-4453 (Clockwise)

Preceding gene: 170761878

Following gene: 170762378

Centisome position: 0.52

GC content: 28.29

Gene sequence:

>555_bases
ATGAAAATTTATAGAATAACTAATTTAAATGTGATTTATGATGCTTTAATGGCCAATAAATGTGTTCTAATCCCTACTGA
TACTATCATTGGTTTATTAGCAAAAAATCAAGATGTAATTTATGAAATTAAGCAACGTGATCGAAATAAGAAAATCATCC
GCTTTGTAGCCGATTACAAATTACTTGGTGATTTAACTGTAGAACAAAAGCAATTTTTAGATCTTTTTTGACCAGGTTCT
GTCACTATCATTAAAAATGGTATTTCTTATCGTATGCCAAATAGCCCTTATATACTAAAATTAATTCAAAAGTTAGGTCC
GTTATATTGTAGTAGTGCTAATATTTCAGGTGAAGAACCAATTAAAAATCATAATGAAGCAATTTTTAAATTTGGAGCAA
ATAGTAAACTAATTTATGTTGAAGCACAACAACAAATTGGTGTTCCATCAACTATTGTTGACATCGATAAATGAGAATAC
ATTCGTCGTGGTGCTAATGTTGAGATGGTAGATATGTTTATTAAAGAACTAAAAGATAATAAAACAGGGAAATAA

Upstream 100 bases:

>100_bases
TTAGAAAAAGTTATTAAAAAAAATGAATTTCCTCTTTTTTACTACTTTATAAATGATTATAATAATCTATGTAGAATTTT
AATAATAAGTAATATTAAAT

Downstream 100 bases:

>100_bases
TCAATGATAAAAAAAATTTATTTTGGTAATGATCATGCTGCTTATGAAATTAAAGATCAAATTATCACTCATTTAAAACA
AAAAGGTTATCAAATTATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MKIYRITNLNVIYDALMANKCVLIPTDTIIGLLAKNQDVIYEIKQRDRNKKIIRFVADYKLLGDLTVEQKQFLDLFWPGS
VTIIKNGISYRMPNSPYILKLIQKLGPLYCSSANISGEEPIKNHNEAIFKFGANSKLIYVEAQQQIGVPSTIVDIDKWEY
IRRGANVEMVDMFIKELKDNKTGK

Sequences:

>Translated_184_residues
MKIYRITNLNVIYDALMANKCVLIPTDTIIGLLAKNQDVIYEIKQRDRNKKIIRFVADYKLLGDLTVEQKQFLDLF*PGS
VTIIKNGISYRMPNSPYILKLIQKLGPLYCSSANISGEEPIKNHNEAIFKFGANSKLIYVEAQQQIGVPSTIVDIDK*EY
IRRGANVEMVDMFIKELKDNKTGK
>Mature_184_residues
MKIYRITNLNVIYDALMANKCVLIPTDTIIGLLAKNQDVIYEIKQRDRNKKIIRFVADYKLLGDLTVEQKQFLDLF*PGS
VTIIKNGISYRMPNSPYILKLIQKLGPLYCSSANISGEEPIKNHNEAIFKFGANSKLIYVEAQQQIGVPSTIVDIDK*EY
IRRGANVEMVDMFIKELKDNKTGK

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR002052
- InterPro:   IPR004556
- InterPro:   IPR007848
- InterPro:   IPR006070 [H]

Pfam domain/function: PF05175 MTS; PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20710; Mature: 20710

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIYRITNLNVIYDALMANKCVLIPTDTIIGLLAKNQDVIYEIKQRDRNKKIIRFVADYK
CEEEEEECHHHHHHHHHHCCEEEEECHHHHHHHCCCCHHHHEEHHCCCCHHHHHHHHHHH
LLGDLTVEQKQFLDLFPGSVTIIKNGISYRMPNSPYILKLIQKLGPLYCSSANISGEEPI
HCCCCCCCHHHHHHHCCCEEEEEECCCEECCCCCHHHHHHHHHHCCEEECCCCCCCCCCC
KNHNEAIFKFGANSKLIYVEAQQQIGVPSTIVDIDKEYIRRGANVEMVDMFIKELKDNKT
CCCCCEEEEECCCCEEEEEEEHHHCCCCHHHHHCCHHHHHCCCCCHHHHHHHHHHHCCCC
GK
CC
>Mature Secondary Structure
MKIYRITNLNVIYDALMANKCVLIPTDTIIGLLAKNQDVIYEIKQRDRNKKIIRFVADYK
CEEEEEECHHHHHHHHHHCCEEEEECHHHHHHHCCCCHHHHEEHHCCCCHHHHHHHHHHH
LLGDLTVEQKQFLDLFPGSVTIIKNGISYRMPNSPYILKLIQKLGPLYCSSANISGEEPI
HCCCCCCCHHHHHHHCCCEEEEEECCCEECCCCCHHHHHHHHHHCCEEECCCCCCCCCCC
KNHNEAIFKFGANSKLIYVEAQQQIGVPSTIVDIDKEYIRRGANVEMVDMFIKELKDNKT
CCCCCEEEEECCCCEEEEEEEHHHCCCCHHHHHCCHHHHHCCCCCHHHHHHHHHHHCCCC
GK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8948633 [H]