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The map label for this gene is potC [H]

Identifier: 170762006

GI number: 170762006

Start: 139358

End: 140212

Strand: Direct

Name: potC [H]

Synonym: UPA3_0112

Alternate gene names: 170762006

Gene position: 139358-140212 (Clockwise)

Preceding gene: 170761877

Following gene: 170762228

Centisome position: 18.54

GC content: 25.26

Gene sequence:

>855_bases
ATGAAGCAGATTAATTGATTGTCTTGATTGCGTAATTTTTATATTTGAATTATTTTAGCAATCATTTATATTCCTTTAAT
TATCATTGTTTTATTATCATTTACCACACCTTCAATTAAAGGAAACATTACATCAGCTTTTAACTGGAATGATGGTTCAA
ATTATTTAACACTAACAACCAATCAATTTACAGATGCTTTAATTAATACAATTATTATTTCAGTTATCGCTGTACCAATT
TCTACAATCATTGCAACAATAACTTGTTTTGGGGTTTGGCATGCAAAAATATTTTATAAAAAATTAATGACAGCATCATC
ACAAACAAACATAATGATTCCAGACGTAATTAGTGGTATTTCATTATCTTTATTATTTGCTGCTACTTTTATTCCAATTG
GTTTTAGTTTTGGATTTGGTACGATTATATTAGCACACATTTCTTCTTGCACTCCTTATGCAATTATGATTATTTATCCT
AGAATGTTAAAAATGAAAAAAAATTTAATTCTTGCTAGTTATGATTTAGGTTATACAAAAATTGCAACCTTTTTTAGAAT
TATTTTACCTTATTTATTACCTTCAATTATTTCAGCAACAATCATTGTTTTTGCTATGTCTTTTGATGATTTTATTATTA
CTAAATTGGTTGGAGGTAAAGTTAATACCATTGGAACAGAAATGTATTCGATGGCTAAAGGAATTAAAGCATGAGCGGTT
TGTTTTGGTGCTTTAATGGTTTTATTAACAATTTTAATTGCTGCATTAATTAGTGCTAATAAAATTATTAAGTTAAAATT
AATTAATAAACAAACTAATAAACGCAAATTAAAAATTTGAAATAGACAGGTTTAA

Upstream 100 bases:

>100_bases
TTAATTTTATTAGGGATTTATCTTATTATTGTTATTATTCCAAAAATAGTCCAATTAATTTATTACAAACGAAAAAATCT
AAAAAAAGGAGTAAAGAATA

Downstream 100 bases:

>100_bases
ATTATGAAAATTAATAAAAAATTATTAAAAATTTTTGCTGGAATTACTAGTTTGTTAGTTTTTATACCTATAATTACAGC
TTGTAGTCAAAAATCAAAAC

Product: spermidine/putrescine transport system permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MKQINWLSWLRNFYIWIILAIIYIPLIIIVLLSFTTPSIKGNITSAFNWNDGSNYLTLTTNQFTDALINTIIISVIAVPI
STIIATITCFGVWHAKIFYKKLMTASSQTNIMIPDVISGISLSLLFAATFIPIGFSFGFGTIILAHISSCTPYAIMIIYP
RMLKMKKNLILASYDLGYTKIATFFRIILPYLLPSIISATIIVFAMSFDDFIITKLVGGKVNTIGTEMYSMAKGIKAWAV
CFGALMVLLTILIAALISANKIIKLKLINKQTNKRKLKIWNRQV

Sequences:

>Translated_284_residues
MKQIN*LS*LRNFYI*IILAIIYIPLIIIVLLSFTTPSIKGNITSAFNWNDGSNYLTLTTNQFTDALINTIIISVIAVPI
STIIATITCFGVWHAKIFYKKLMTASSQTNIMIPDVISGISLSLLFAATFIPIGFSFGFGTIILAHISSCTPYAIMIIYP
RMLKMKKNLILASYDLGYTKIATFFRIILPYLLPSIISATIIVFAMSFDDFIITKLVGGKVNTIGTEMYSMAKGIKA*AV
CFGALMVLLTILIAALISANKIIKLKLINKQTNKRKLKI*NRQV
>Mature_284_residues
MKQIN*LS*LRNFYI*IILAIIYIPLIIIVLLSFTTPSIKGNITSAFNWNDGSNYLTLTTNQFTDALINTIIISVIAVPI
STIIATITCFGVWHAKIFYKKLMTASSQTNIMIPDVISGISLSLLFAATFIPIGFSFGFGTIILAHISSCTPYAIMIIYP
RMLKMKKNLILASYDLGYTKIATFFRIILPYLLPSIISATIIVFAMSFDDFIITKLVGGKVNTIGTEMYSMAKGIKA*AV
CFGALMVLLTILIAALISANKIIKLKLINKQTNKRKLKI*NRQV

Specific function: Required for the activity of the bacterial transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=235, Percent_Identity=24.2553191489362, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787081, Length=213, Percent_Identity=30.5164319248826, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787714, Length=160, Percent_Identity=25.625, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30764; Mature: 30764

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQINLSLRNFYIIILAIIYIPLIIIVLLSFTTPSIKGNITSAFNWNDGSNYLTLTTNQF
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCHH
TDALINTIIISVIAVPISTIIATITCFGVWHAKIFYKKLMTASSQTNIMIPDVISGISLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHH
LLFAATFIPIGFSFGFGTIILAHISSCTPYAIMIIYPRMLKMKKNLILASYDLGYTKIAT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCEEEEECCCCHHHHHH
FFRIILPYLLPSIISATIIVFAMSFDDFIITKLVGGKVNTIGTEMYSMAKGIKAAVCFGA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LMVLLTILIAALISANKIIKLKLINKQTNKRKLKINRQV
HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEECCC
>Mature Secondary Structure
MKQINLSLRNFYIIILAIIYIPLIIIVLLSFTTPSIKGNITSAFNWNDGSNYLTLTTNQF
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCHH
TDALINTIIISVIAVPISTIIATITCFGVWHAKIFYKKLMTASSQTNIMIPDVISGISLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHH
LLFAATFIPIGFSFGFGTIILAHISSCTPYAIMIIYPRMLKMKKNLILASYDLGYTKIAT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCEEEEECCCCHHHHHH
FFRIILPYLLPSIISATIIVFAMSFDDFIITKLVGGKVNTIGTEMYSMAKGIKAAVCFGA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LMVLLTILIAALISANKIIKLKLINKQTNKRKLKINRQV
HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8948633 [H]