Definition Clostridium botulinum B1 str. Okra, complete genome.
Accession NC_010516
Length 3,958,233

Click here to switch to the map view.

The map label for this gene is 170757849

Identifier: 170757849

GI number: 170757849

Start: 1281326

End: 1282120

Strand: Reverse

Name: 170757849

Synonym: CLD_3412

Alternate gene names: NA

Gene position: 1282120-1281326 (Counterclockwise)

Preceding gene: 170755315

Following gene: 170755720

Centisome position: 32.39

GC content: 22.89

Gene sequence:

>795_bases
ATGTTTTGTTCTAATTGTGGAAACAAACTTCCAGAAGATGCTCAGTTTTGTACAAACTGTGGTTCTCCTGTATTAGGTAA
TAAACCAACAAATTTTAAAGATGGAAAAGCTAAAAATGAATTTACTAATTTTTTAAATTTTTTTATTAATTCTTTAAAAA
ATCCTGTAGATAAATTTAATGAATCTATAAAAAATATGAGTCTTTCTATGGTATCTTTATACTTTATAATTCTTACATTA
ATATCTGGACTTATTACTTCTTTTTCAATAAAGAAGTTTATATCTGATTTTCTAGCTTTCTTTTCAAGTTTTGTAGATAA
TACTTTATCCTTTCACGAAAGAGCATCATTATCTACAGAAATTCAAGGGATTATATCTAAAATGATACCTGTTTCAAAAC
TATTATTTTGGTATATTCTAGGCATTGTGTTGTTCTATGGATTAATAATATTAATTATGTATGTAATAGTTACTTTAATA
ATGAAAAAACAAATTAAATTTGAAAGCTATTTGAAGGTTTCTCTGATATCTCTTGTAATATATTCAACTTTTACAATATT
AGCAGTTATAGTAGCATTTTTAAGCTTTATACTTTCTATGTTTGTATACTCTTTAGCTCATATACTTGTTATAGTTGTAT
TATATAATGGTTTTAAAAATATAATGGAAGATGATTCTAAAACTCCTTACATATTCTCATTTTCTTATATTATAGCTACT
AACTTATCCTATTATTTTATATTTAAGTCTATAATGGAATACTACCTTATGGCTATAAAAAATAATATTATTTAA

Upstream 100 bases:

>100_bases
TTCATACATTTTATTTTAAAAAATTATCCTTTATGTTATAATTTAGTAGCACTATTTGTTAACTTTTTCTTAATACTATT
AATACTAAAGAGGTGATTTT

Downstream 100 bases:

>100_bases
GATTCACATAAGAACAAAGGATTTACTGCTAAGTATAAAAATATTTCTTAGCAATAAATCCTTTTTAATTTAAAAAATTG
ATATATATATTTTCTCCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MFCSNCGNKLPEDAQFCTNCGSPVLGNKPTNFKDGKAKNEFTNFLNFFINSLKNPVDKFNESIKNMSLSMVSLYFIILTL
ISGLITSFSIKKFISDFLAFFSSFVDNTLSFHERASLSTEIQGIISKMIPVSKLLFWYILGIVLFYGLIILIMYVIVTLI
MKKQIKFESYLKVSLISLVIYSTFTILAVIVAFLSFILSMFVYSLAHILVIVVLYNGFKNIMEDDSKTPYIFSFSYIIAT
NLSYYFIFKSIMEYYLMAIKNNII

Sequences:

>Translated_264_residues
MFCSNCGNKLPEDAQFCTNCGSPVLGNKPTNFKDGKAKNEFTNFLNFFINSLKNPVDKFNESIKNMSLSMVSLYFIILTL
ISGLITSFSIKKFISDFLAFFSSFVDNTLSFHERASLSTEIQGIISKMIPVSKLLFWYILGIVLFYGLIILIMYVIVTLI
MKKQIKFESYLKVSLISLVIYSTFTILAVIVAFLSFILSMFVYSLAHILVIVVLYNGFKNIMEDDSKTPYIFSFSYIIAT
NLSYYFIFKSIMEYYLMAIKNNII
>Mature_264_residues
MFCSNCGNKLPEDAQFCTNCGSPVLGNKPTNFKDGKAKNEFTNFLNFFINSLKNPVDKFNESIKNMSLSMVSLYFIILTL
ISGLITSFSIKKFISDFLAFFSSFVDNTLSFHERASLSTEIQGIISKMIPVSKLLFWYILGIVLFYGLIILIMYVIVTLI
MKKQIKFESYLKVSLISLVIYSTFTILAVIVAFLSFILSMFVYSLAHILVIVVLYNGFKNIMEDDSKTPYIFSFSYIIAT
NLSYYFIFKSIMEYYLMAIKNNII

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30221; Mature: 30221

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA