Definition | Clostridium botulinum B1 str. Okra, complete genome. |
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Accession | NC_010516 |
Length | 3,958,233 |
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The map label for this gene is 170757849
Identifier: 170757849
GI number: 170757849
Start: 1281326
End: 1282120
Strand: Reverse
Name: 170757849
Synonym: CLD_3412
Alternate gene names: NA
Gene position: 1282120-1281326 (Counterclockwise)
Preceding gene: 170755315
Following gene: 170755720
Centisome position: 32.39
GC content: 22.89
Gene sequence:
>795_bases ATGTTTTGTTCTAATTGTGGAAACAAACTTCCAGAAGATGCTCAGTTTTGTACAAACTGTGGTTCTCCTGTATTAGGTAA TAAACCAACAAATTTTAAAGATGGAAAAGCTAAAAATGAATTTACTAATTTTTTAAATTTTTTTATTAATTCTTTAAAAA ATCCTGTAGATAAATTTAATGAATCTATAAAAAATATGAGTCTTTCTATGGTATCTTTATACTTTATAATTCTTACATTA ATATCTGGACTTATTACTTCTTTTTCAATAAAGAAGTTTATATCTGATTTTCTAGCTTTCTTTTCAAGTTTTGTAGATAA TACTTTATCCTTTCACGAAAGAGCATCATTATCTACAGAAATTCAAGGGATTATATCTAAAATGATACCTGTTTCAAAAC TATTATTTTGGTATATTCTAGGCATTGTGTTGTTCTATGGATTAATAATATTAATTATGTATGTAATAGTTACTTTAATA ATGAAAAAACAAATTAAATTTGAAAGCTATTTGAAGGTTTCTCTGATATCTCTTGTAATATATTCAACTTTTACAATATT AGCAGTTATAGTAGCATTTTTAAGCTTTATACTTTCTATGTTTGTATACTCTTTAGCTCATATACTTGTTATAGTTGTAT TATATAATGGTTTTAAAAATATAATGGAAGATGATTCTAAAACTCCTTACATATTCTCATTTTCTTATATTATAGCTACT AACTTATCCTATTATTTTATATTTAAGTCTATAATGGAATACTACCTTATGGCTATAAAAAATAATATTATTTAA
Upstream 100 bases:
>100_bases TTCATACATTTTATTTTAAAAAATTATCCTTTATGTTATAATTTAGTAGCACTATTTGTTAACTTTTTCTTAATACTATT AATACTAAAGAGGTGATTTT
Downstream 100 bases:
>100_bases GATTCACATAAGAACAAAGGATTTACTGCTAAGTATAAAAATATTTCTTAGCAATAAATCCTTTTTAATTTAAAAAATTG ATATATATATTTTCTCCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MFCSNCGNKLPEDAQFCTNCGSPVLGNKPTNFKDGKAKNEFTNFLNFFINSLKNPVDKFNESIKNMSLSMVSLYFIILTL ISGLITSFSIKKFISDFLAFFSSFVDNTLSFHERASLSTEIQGIISKMIPVSKLLFWYILGIVLFYGLIILIMYVIVTLI MKKQIKFESYLKVSLISLVIYSTFTILAVIVAFLSFILSMFVYSLAHILVIVVLYNGFKNIMEDDSKTPYIFSFSYIIAT NLSYYFIFKSIMEYYLMAIKNNII
Sequences:
>Translated_264_residues MFCSNCGNKLPEDAQFCTNCGSPVLGNKPTNFKDGKAKNEFTNFLNFFINSLKNPVDKFNESIKNMSLSMVSLYFIILTL ISGLITSFSIKKFISDFLAFFSSFVDNTLSFHERASLSTEIQGIISKMIPVSKLLFWYILGIVLFYGLIILIMYVIVTLI MKKQIKFESYLKVSLISLVIYSTFTILAVIVAFLSFILSMFVYSLAHILVIVVLYNGFKNIMEDDSKTPYIFSFSYIIAT NLSYYFIFKSIMEYYLMAIKNNII >Mature_264_residues MFCSNCGNKLPEDAQFCTNCGSPVLGNKPTNFKDGKAKNEFTNFLNFFINSLKNPVDKFNESIKNMSLSMVSLYFIILTL ISGLITSFSIKKFISDFLAFFSSFVDNTLSFHERASLSTEIQGIISKMIPVSKLLFWYILGIVLFYGLIILIMYVIVTLI MKKQIKFESYLKVSLISLVIYSTFTILAVIVAFLSFILSMFVYSLAHILVIVVLYNGFKNIMEDDSKTPYIFSFSYIIAT NLSYYFIFKSIMEYYLMAIKNNII
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30221; Mature: 30221
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFCSNCGNKLPEDAQFCTNCGSPVLGNKPTNFKDGKAKNEFTNFLNFFINSLKNPVDKFN CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ESIKNMSLSMVSLYFIILTLISGLITSFSIKKFISDFLAFFSSFVDNTLSFHERASLSTE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQGIISKMIPVSKLLFWYILGIVLFYGLIILIMYVIVTLIMKKQIKFESYLKVSLISLVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSTFTILAVIVAFLSFILSMFVYSLAHILVIVVLYNGFKNIMEDDSKTPYIFSFSYIIAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHH NLSYYFIFKSIMEYYLMAIKNNII HHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MFCSNCGNKLPEDAQFCTNCGSPVLGNKPTNFKDGKAKNEFTNFLNFFINSLKNPVDKFN CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ESIKNMSLSMVSLYFIILTLISGLITSFSIKKFISDFLAFFSSFVDNTLSFHERASLSTE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQGIISKMIPVSKLLFWYILGIVLFYGLIILIMYVIVTLIMKKQIKFESYLKVSLISLVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSTFTILAVIVAFLSFILSMFVYSLAHILVIVVLYNGFKNIMEDDSKTPYIFSFSYIIAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHH NLSYYFIFKSIMEYYLMAIKNNII HHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA