| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is npr
Identifier: 170756874
GI number: 170756874
Start: 1602381
End: 1604159
Strand: Reverse
Name: npr
Synonym: CLD_3107
Alternate gene names: 170756874
Gene position: 1604159-1602381 (Counterclockwise)
Preceding gene: 170754349
Following gene: 170756071
Centisome position: 40.53
GC content: 30.52
Gene sequence:
>1779_bases ATGAAAAGCAAAAAATTATTAGCTACAGTGTTAAGTGCTGTAATCACTTTCTCCGCAGTTTCAGCAGTTTCAGCTGCACC TGTAGGAAAAGAAAGTAAAAGTGAACCAAAAATCACAACAATATCCTGGGACAAAAGTGAACAAAACACTAAAAAGGCTG CTACAGACATAAAGCAAAAGAAATTTAACAACGCTCAAGAAGTAACTAATTTCTTTGAAAAAAACATCTCTAAATTTGGG GTAAAAAAAGGTACTCTTAAGAGTACTAAAACTTTAAAAGATGATAAAGGTAAAACTCACTATCATACAATTTATGAAGT AGAAGGTATACCTGTATACTATGGAAGAATTGTCTTTACTACTGAAAAAGACTCAACTATGAACTCTATAAATGGTAGAG TTGATACTGTTTTTGAAAATGGAAATTGGAAAAACAAAATCAAACTATCAAAAGAAGAGGCCATAGCAAAAGCTAAAGGT GATATTAAAGATCAAAAATCAAATAGTGAAAAAGCTGATTTATATTTGTACAATTTTGAAGGCAACCCTTATGTAGTTTA TTTAGTAAATGCAACTACAGATAATGGTAATTGGAATGTTTTTGTTAATGCTGAAGACGGCTCTATAGTAAATAAATTCG ATACTACCCCTACTTTAGTTGAGAATAAAGATAAAAAATTACCTAATGCTAAAAAAATTAAAGATGAAGCTGAAAAAAAT GAAGCTAAAAAGGCTAATGCTAGTAATGTAAATAGTGTAACTGATGTACAAGGCCAAAGCGTTAAAGGAATAGGAAGAAC TAGCTTGGATGGACTAGTAAATATTGATCTAACTTATGGCAATGGAAAATATTATTTAAAAGACAATAATAGAAAGATTT ATCTATATGATTTAAAAAATCAAGTTAGTGGTGACGATTTGTACAGATATATTATAGAACATTATTACTATGGTGCTCCT GACTATAAACAAAGATTAATGTCTCAATCCGAACTAGTATCTAATTCAAATAATAATTTTATAAATGATAATCAAGTTAA TTCTGTAGATGCTTATGTAAATACAGCTAAGACTTATGATTATTATAAAAATAAATTATCTAGAAATAGTATTGATAATA AAGGTATGAATGTTAATGGATTTGTCCATGTAGACAAAAATTTGGGTAACGCCTTTTGGTATGGACCATACGATAGTATG TTCTTTGGTGATGGTGACGGAGTACGCTTCTCTGCTCTTGCTAAATCTTTAGATGTTGTAGGACATGAACTTAGTCATGG TGTTACTAATAAACAATCTGACCTTAATTATGAAAACGAATCTGGTGCTTTAAACGAATCCTTCTCAGATATTATGGGAA CAGCTGTTGAGGGTAAAAACTTTGTATTAGGTGAAGATTGCTGGATTGCTGGAGGGGTAATGAGAGATATGGAAAACCCA TCTAGAGGAAATCAACCAGCTCATATGAAAGATTATGCATATATGTCTGAAGATAACGGTGGAGTTCATAAAAATTCAGG TATAATAAACCATGCGGCTTATTTAATTGCAGATGGATTTGAAAAAATGGGGACAAAAGATAGTAAGGATATTATGGGAA AACTATTTTATATAGCTAATTGCTATTACTGGGATCAAACAACAGATTTTGCTAAATGTAGAAATGATGTAGTTAGAGTT GCTAAAGATCTTTATGGTGACAATAGTAAAGAAGTTGAAATTGTAAAAAATGCTTTTGATAAAGTTGGAGTATATGCTAC ACCTCAATTATCACTATAA
Upstream 100 bases:
>100_bases TTATAAAATATATTTATAAAACTATATAATTTTAGCATTTTACTTTATAAACATTAATAGGTTTATAAGTAAAAATATAT TAAATGGGGGTTATTTATTT
Downstream 100 bases:
>100_bases TAAAAATATAATTAAAACTGTAAATATAACTATATAAAAAACTAAATTTAAATAAATAAGATGATTTCTATTCAAGTAAG AAATCATCTTATTTATATAT
Product: thermolysin metallopeptidase
Products: NA
Alternate protein names: Neutral protease [H]
Number of amino acids: Translated: 592; Mature: 592
Protein sequence:
>592_residues MKSKKLLATVLSAVITFSAVSAVSAAPVGKESKSEPKITTISWDKSEQNTKKAATDIKQKKFNNAQEVTNFFEKNISKFG VKKGTLKSTKTLKDDKGKTHYHTIYEVEGIPVYYGRIVFTTEKDSTMNSINGRVDTVFENGNWKNKIKLSKEEAIAKAKG DIKDQKSNSEKADLYLYNFEGNPYVVYLVNATTDNGNWNVFVNAEDGSIVNKFDTTPTLVENKDKKLPNAKKIKDEAEKN EAKKANASNVNSVTDVQGQSVKGIGRTSLDGLVNIDLTYGNGKYYLKDNNRKIYLYDLKNQVSGDDLYRYIIEHYYYGAP DYKQRLMSQSELVSNSNNNFINDNQVNSVDAYVNTAKTYDYYKNKLSRNSIDNKGMNVNGFVHVDKNLGNAFWYGPYDSM FFGDGDGVRFSALAKSLDVVGHELSHGVTNKQSDLNYENESGALNESFSDIMGTAVEGKNFVLGEDCWIAGGVMRDMENP SRGNQPAHMKDYAYMSEDNGGVHKNSGIINHAAYLIADGFEKMGTKDSKDIMGKLFYIANCYYWDQTTDFAKCRNDVVRV AKDLYGDNSKEVEIVKNAFDKVGVYATPQLSL
Sequences:
>Translated_592_residues MKSKKLLATVLSAVITFSAVSAVSAAPVGKESKSEPKITTISWDKSEQNTKKAATDIKQKKFNNAQEVTNFFEKNISKFG VKKGTLKSTKTLKDDKGKTHYHTIYEVEGIPVYYGRIVFTTEKDSTMNSINGRVDTVFENGNWKNKIKLSKEEAIAKAKG DIKDQKSNSEKADLYLYNFEGNPYVVYLVNATTDNGNWNVFVNAEDGSIVNKFDTTPTLVENKDKKLPNAKKIKDEAEKN EAKKANASNVNSVTDVQGQSVKGIGRTSLDGLVNIDLTYGNGKYYLKDNNRKIYLYDLKNQVSGDDLYRYIIEHYYYGAP DYKQRLMSQSELVSNSNNNFINDNQVNSVDAYVNTAKTYDYYKNKLSRNSIDNKGMNVNGFVHVDKNLGNAFWYGPYDSM FFGDGDGVRFSALAKSLDVVGHELSHGVTNKQSDLNYENESGALNESFSDIMGTAVEGKNFVLGEDCWIAGGVMRDMENP SRGNQPAHMKDYAYMSEDNGGVHKNSGIINHAAYLIADGFEKMGTKDSKDIMGKLFYIANCYYWDQTTDFAKCRNDVVRV AKDLYGDNSKEVEIVKNAFDKVGVYATPQLSL >Mature_592_residues MKSKKLLATVLSAVITFSAVSAVSAAPVGKESKSEPKITTISWDKSEQNTKKAATDIKQKKFNNAQEVTNFFEKNISKFG VKKGTLKSTKTLKDDKGKTHYHTIYEVEGIPVYYGRIVFTTEKDSTMNSINGRVDTVFENGNWKNKIKLSKEEAIAKAKG DIKDQKSNSEKADLYLYNFEGNPYVVYLVNATTDNGNWNVFVNAEDGSIVNKFDTTPTLVENKDKKLPNAKKIKDEAEKN EAKKANASNVNSVTDVQGQSVKGIGRTSLDGLVNIDLTYGNGKYYLKDNNRKIYLYDLKNQVSGDDLYRYIIEHYYYGAP DYKQRLMSQSELVSNSNNNFINDNQVNSVDAYVNTAKTYDYYKNKLSRNSIDNKGMNVNGFVHVDKNLGNAFWYGPYDSM FFGDGDGVRFSALAKSLDVVGHELSHGVTNKQSDLNYENESGALNESFSDIMGTAVEGKNFVLGEDCWIAGGVMRDMENP SRGNQPAHMKDYAYMSEDNGGVHKNSGIINHAAYLIADGFEKMGTKDSKDIMGKLFYIANCYYWDQTTDFAKCRNDVVRV AKDLYGDNSKEVEIVKNAFDKVGVYATPQLSL
Specific function: Extracellular zinc metalloprotease [H]
COG id: COG3227
COG function: function code E; Zinc metalloprotease (elastase)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005075 - InterPro: IPR013856 - InterPro: IPR001570 - InterPro: IPR011096 [H]
Pfam domain/function: PF07504 FTP; PF03413 PepSY; PF01447 Peptidase_M4; PF02868 Peptidase_M4_C [H]
EC number: =3.4.24.28 [H]
Molecular weight: Translated: 66201; Mature: 66201
Theoretical pI: Translated: 8.00; Mature: 8.00
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSKKLLATVLSAVITFSAVSAVSAAPVGKESKSEPKITTISWDKSEQNTKKAATDIKQK CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH KFNNAQEVTNFFEKNISKFGVKKGTLKSTKTLKDDKGKTHYHTIYEVEGIPVYYGRIVFT HCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEE TEKDSTMNSINGRVDTVFENGNWKNKIKLSKEEAIAKAKGDIKDQKSNSEKADLYLYNFE ECCCCHHHHCCCEEEEEEECCCCCCEEEECHHHHHHHHCCCCCCCCCCCCCCEEEEEEEC GNPYVVYLVNATTDNGNWNVFVNAEDGSIVNKFDTTPTLVENKDKKLPNAKKIKDEAEKN CCCEEEEEEEEECCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH EAKKANASNVNSVTDVQGQSVKGIGRTSLDGLVNIDLTYGNGKYYLKDNNRKIYLYDLKN HHHCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCEEEEEECCC QVSGDDLYRYIIEHYYYGAPDYKQRLMSQSELVSNSNNNFINDNQVNSVDAYVNTAKTYD CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH YYKNKLSRNSIDNKGMNVNGFVHVDKNLGNAFWYGPYDSMFFGDGDGVRFSALAKSLDVV HHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCEEECCCCEEHHHHHHHHHHH GHELSHGVTNKQSDLNYENESGALNESFSDIMGTAVEGKNFVLGEDCWIAGGVMRDMENP HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCEEECCHHHHCCCC SRGNQPAHMKDYAYMSEDNGGVHKNSGIINHAAYLIADGFEKMGTKDSKDIMGKLFYIAN CCCCCCCCCCCCEEEECCCCCEECCCCCHHHHHHHHHCCHHHHCCCCCHHHHHHEEEEEE CYYWDQTTDFAKCRNDVVRVAKDLYGDNSKEVEIVKNAFDKVGVYATPQLSL EEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEECCCCCC >Mature Secondary Structure MKSKKLLATVLSAVITFSAVSAVSAAPVGKESKSEPKITTISWDKSEQNTKKAATDIKQK CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH KFNNAQEVTNFFEKNISKFGVKKGTLKSTKTLKDDKGKTHYHTIYEVEGIPVYYGRIVFT HCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEE TEKDSTMNSINGRVDTVFENGNWKNKIKLSKEEAIAKAKGDIKDQKSNSEKADLYLYNFE ECCCCHHHHCCCEEEEEEECCCCCCEEEECHHHHHHHHCCCCCCCCCCCCCCEEEEEEEC GNPYVVYLVNATTDNGNWNVFVNAEDGSIVNKFDTTPTLVENKDKKLPNAKKIKDEAEKN CCCEEEEEEEEECCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH EAKKANASNVNSVTDVQGQSVKGIGRTSLDGLVNIDLTYGNGKYYLKDNNRKIYLYDLKN HHHCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCEEEEEECCC QVSGDDLYRYIIEHYYYGAPDYKQRLMSQSELVSNSNNNFINDNQVNSVDAYVNTAKTYD CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH YYKNKLSRNSIDNKGMNVNGFVHVDKNLGNAFWYGPYDSMFFGDGDGVRFSALAKSLDVV HHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCEEECCCCEEHHHHHHHHHHH GHELSHGVTNKQSDLNYENESGALNESFSDIMGTAVEGKNFVLGEDCWIAGGVMRDMENP HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCEEECCHHHHCCCC SRGNQPAHMKDYAYMSEDNGGVHKNSGIINHAAYLIADGFEKMGTKDSKDIMGKLFYIAN CCCCCCCCCCCCEEEECCCCCEECCCCCHHHHHHHHHCCHHHHCCCCCHHHHHHEEEEEE CYYWDQTTDFAKCRNDVVRVAKDLYGDNSKEVEIVKNAFDKVGVYATPQLSL EEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7764969 [H]