| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170756744
Identifier: 170756744
GI number: 170756744
Start: 3551669
End: 3552835
Strand: Reverse
Name: 170756744
Synonym: CLD_1238
Alternate gene names: NA
Gene position: 3552835-3551669 (Counterclockwise)
Preceding gene: 170755508
Following gene: 170757531
Centisome position: 89.76
GC content: 31.45
Gene sequence:
>1167_bases ATGGCAACAAGTAAAAAAAATATGACAGATGAAGTAAAACAGAAAAAATCAGGTATTCCTATATATTTGGGAATTGCCAG TGTATGGTTTGGAGCTCATTGTGGACCAGGAGTAGCTTCAGGTAAACAAACAGCTGTTTTTTACAGTGAATTTGGAAAAT GGGCCTTTATAACTCCAATTATTGCAATGGTGTTAATGGGCCTTTGTATTTATTATTCTGTAGAATATGCTCGTTTAACA AAGGCAAAAAATTTTAGAGAATTAACTGACAACTTATTTCATCCATATGAAAGAGTTTTTTCTACATTTTTTGAAATTAC ATTTATGGCAACTGTTCTCATGGTTGTAGGAGGATGTATAGCCACAGGAGCAGCAGTTCTAAATGAGTATACAGGCCTTC CTATAACTGTAGGAAGTATAATATTAGTAGTAGTTACAATACTCTTGTCAATGTATGGTGCCAATTTAGTACGTTCAGCA TCAACTGTTATGACGATATTTATTATAGCTTGTTTAATAGCTATGGTGGTGCTTGGATTACTTTCTTCACAAGGTGATTT TGCTGGAAACTGGAAAGCTAAATCCTTTAGTGATGTTTCACCAATAAAAGCTATAGTTATGGCTGTTGTATATACTGGAT TTCAATCAGCTGGAAATATTGCGAATGCTGTATCTGTTTGTGAAGGTATAGAAAGTAAGAAAGAATCTAAAAAAGCAGCA ATTTTGGGTACAATATTAAATGCATTACTTATTTTAGGAATAGTATTTTTATTATTTGCATATCCAGAGTCAATAAAAAA GACTCTACCAAATTATTTTGTGGCAGATAAAGTTGGATCCTCTGTATTGTTATTTTTATATGTGGTAATGGTATTACTTG CAGTTATGAGCACCAATGTTTCCTTTTCATTTTCTGTAGTTGCAAGATATGGAGAAAAATTTCCTATGAAGCCAGGAGTA AAAAGAGATTTTGTTATAACATTAATTCTAATGATATTATGTGTAGTAGTATCTGCCTTAGGATTAGATGCTATTGTAAG TAAAGGGTATAAATACCTAGGATATGCTTGTATATTTGCAGTGGTCATACCAATAATATTAATTGGATTTAAGAAGACAA GGAGTTTATATAAAAGTGAATGTAATAAAGGTGAATATAAAATATAA
Upstream 100 bases:
>100_bases TTAAAATATTTATAAGCTTTAGTATATAAAGGTAATAAAATATAAGTAAAAGTGTTTTATTATAAGATAATAAAAAATTA ATTTGAGAGGAGAAGACAGG
Downstream 100 bases:
>100_bases AAAGCAGACTTTAAAAAGCCTGCTTTTTATATTTTATATCTATTTGATATAATAAAGTTCTTTAATTAATAGATAAATAT TATATAATTTTATTAAGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 388; Mature: 387
Protein sequence:
>388_residues MATSKKNMTDEVKQKKSGIPIYLGIASVWFGAHCGPGVASGKQTAVFYSEFGKWAFITPIIAMVLMGLCIYYSVEYARLT KAKNFRELTDNLFHPYERVFSTFFEITFMATVLMVVGGCIATGAAVLNEYTGLPITVGSIILVVVTILLSMYGANLVRSA STVMTIFIIACLIAMVVLGLLSSQGDFAGNWKAKSFSDVSPIKAIVMAVVYTGFQSAGNIANAVSVCEGIESKKESKKAA ILGTILNALLILGIVFLLFAYPESIKKTLPNYFVADKVGSSVLLFLYVVMVLLAVMSTNVSFSFSVVARYGEKFPMKPGV KRDFVITLILMILCVVVSALGLDAIVSKGYKYLGYACIFAVVIPIILIGFKKTRSLYKSECNKGEYKI
Sequences:
>Translated_388_residues MATSKKNMTDEVKQKKSGIPIYLGIASVWFGAHCGPGVASGKQTAVFYSEFGKWAFITPIIAMVLMGLCIYYSVEYARLT KAKNFRELTDNLFHPYERVFSTFFEITFMATVLMVVGGCIATGAAVLNEYTGLPITVGSIILVVVTILLSMYGANLVRSA STVMTIFIIACLIAMVVLGLLSSQGDFAGNWKAKSFSDVSPIKAIVMAVVYTGFQSAGNIANAVSVCEGIESKKESKKAA ILGTILNALLILGIVFLLFAYPESIKKTLPNYFVADKVGSSVLLFLYVVMVLLAVMSTNVSFSFSVVARYGEKFPMKPGV KRDFVITLILMILCVVVSALGLDAIVSKGYKYLGYACIFAVVIPIILIGFKKTRSLYKSECNKGEYKI >Mature_387_residues ATSKKNMTDEVKQKKSGIPIYLGIASVWFGAHCGPGVASGKQTAVFYSEFGKWAFITPIIAMVLMGLCIYYSVEYARLTK AKNFRELTDNLFHPYERVFSTFFEITFMATVLMVVGGCIATGAAVLNEYTGLPITVGSIILVVVTILLSMYGANLVRSAS TVMTIFIIACLIAMVVLGLLSSQGDFAGNWKAKSFSDVSPIKAIVMAVVYTGFQSAGNIANAVSVCEGIESKKESKKAAI LGTILNALLILGIVFLLFAYPESIKKTLPNYFVADKVGSSVLLFLYVVMVLLAVMSTNVSFSFSVVARYGEKFPMKPGVK RDFVITLILMILCVVVSALGLDAIVSKGYKYLGYACIFAVVIPIILIGFKKTRSLYKSECNKGEYKI
Specific function: Unknown
COG id: COG3949
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42114; Mature: 41983
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: PS00079 MULTICOPPER_OXIDASE1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATSKKNMTDEVKQKKSGIPIYLGIASVWFGAHCGPGVASGKQTAVFYSEFGKWAFITPI CCCCCCCCHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHH IAMVLMGLCIYYSVEYARLTKAKNFRELTDNLFHPYERVFSTFFEITFMATVLMVVGGCI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATGAAVLNEYTGLPITVGSIILVVVTILLSMYGANLVRSASTVMTIFIIACLIAMVVLGL HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSSQGDFAGNWKAKSFSDVSPIKAIVMAVVYTGFQSAGNIANAVSVCEGIESKKESKKAA HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH ILGTILNALLILGIVFLLFAYPESIKKTLPNYFVADKVGSSVLLFLYVVMVLLAVMSTNV HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHCCC SFSFSVVARYGEKFPMKPGVKRDFVITLILMILCVVVSALGLDAIVSKGYKYLGYACIFA CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH VVIPIILIGFKKTRSLYKSECNKGEYKI HHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure ATSKKNMTDEVKQKKSGIPIYLGIASVWFGAHCGPGVASGKQTAVFYSEFGKWAFITPI CCCCCCCHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHH IAMVLMGLCIYYSVEYARLTKAKNFRELTDNLFHPYERVFSTFFEITFMATVLMVVGGCI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATGAAVLNEYTGLPITVGSIILVVVTILLSMYGANLVRSASTVMTIFIIACLIAMVVLGL HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSSQGDFAGNWKAKSFSDVSPIKAIVMAVVYTGFQSAGNIANAVSVCEGIESKKESKKAA HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH ILGTILNALLILGIVFLLFAYPESIKKTLPNYFVADKVGSSVLLFLYVVMVLLAVMSTNV HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHCCC SFSFSVVARYGEKFPMKPGVKRDFVITLILMILCVVVSALGLDAIVSKGYKYLGYACIFA CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH VVIPIILIGFKKTRSLYKSECNKGEYKI HHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA