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The map label for this gene is yfmR [H]

Identifier: 170756325

GI number: 170756325

Start: 1187144

End: 1189063

Strand: Reverse

Name: yfmR [H]

Synonym: CLD_3495

Alternate gene names: 170756325

Gene position: 1189063-1187144 (Counterclockwise)

Preceding gene: 170754807

Following gene: 170756648

Centisome position: 30.04

GC content: 28.7

Gene sequence:

>1920_bases
ATGATTATAGTAACTGTTGAAAATATATGCAAAAGTTATGGTGAAAAAACTTTATTTAAAGATGTTTCTTTTACCATAAG
TGATGAAGATAAAATAGGTTTAATAGGAGTTAACGGTACGGGAAAGTCTTCTCTTTTAAAAATTGTTACCGGTGAAGATA
GCCCTGATGGTGGTATCATTACTATTCCTAAGGGAGCTACCATTGAATATTTAGATCAAAATCCAGATCTAGATCCTAAT
GCTACAATATTAGAACAAGTATTTAAAGGTAATTCTAAAATAATGTCTGTAATAGGTGAATATGAAAAAGCTTTAGACCT
GATTTCTAAAAATTCTGAAGATGAAAAACTGCAAAATCATTTACTAACATTAACTAGTGAAATGGATTCCTTAGATACCT
GGGATCTTGAAAGCAAAATTAAAACCGTTCTTACTAAACTTAATGTAACAGACTTTGATAAAAAAATAAAAGAGCTTTCT
GGTGGACAAAAGAAAAGAGTCGCCTTGTGCAGCGCCTTAATATCTCCTTGCGATTTGCTTGTATTAGATGAACCAACAAA
CCACATGGATAATGATAGTATAGATTGGCTTGAAAATTATTTGCAAACTAGAAAAGGTGCCCTTTTAATGGTAACTCATG
ACAGATATTTTCTAGATAGAGTTGTTAATAAAACTTTAGAATTAGACTATGGAACTATGTACACTTACAATTGTAATTAC
TCACAATTTGTAGAAAAGAAAGCAGAAAGAAAAGCATTAGAAAATTCCTTAGAAGAAAAAAGACAAAGTCTTTATAAAAA
AGAATTAGAATGGATTAGAGCCGGCGTTCAGGCAAGAGGCACCAAACAAAAAGCAAGAATAAAAAGATTTGAAGAATTAG
GAGAAAGCAATTTTAATCATAATAGTGATGATATAGATATATCTGTAGCTCATTCAAGATTAGGTAAAAAAATAATTAAT
ATAGAAAACCTAACTAAAAAATTTGAAGAAAAAACTTTAATAAAAGACTTTAATTACATTTTACTTAGGAATGATCGCAT
TGGTGTAGTGGGAAACAATGGAATGGGTAAGTCTACCCTTTTAAATATTATTACAAATAAAATAAATTCAGATAGTGGTT
CTATTGATATAGGTACTACAGTAAATATTGCATATTTCTCCCAGCATTCAGAGGATATGGATCCAAATTTAAGAGCTATA
GAATATATAAGAGAAACAGCAGAATTTATAACCACAGCAGATGGAACTAAAATAAGTGCTTCTCAAATGATGGAAAGATT
TCTTTTCACAGATGATATGCAATGGTGCTATATTTCGAAACTATCCGGTGGAGAAAAAAGAAGACTATATCTTTTAAAAA
TCTTAATGACTGCACCTAATGTACTTATATTGGATGAACCAACTAATGATCTAGATATTGATACATTAAAAGTTTTAGAA
AACTATATTGATGAATTTAATGGTCCAGTTATATCCGTATCCCATGATAGATACTTTTTAGATAGAATCTGTAATAAAAT
CCTTCACTTTGAAGGTAACGGAAAAATTTCTGAGTACATAGGAAACTATTCAGACTTTATATATAGGAAAAAAGAGATCT
CAAATATAACTTCAAAAGAAGAAAAAACAAATAAAGCTTTAAAAGAAAACAATATTCAAAAGGAAAAAACATCAAAATTA
AAATTCTCTTATAAAGAAAAACTTGAATACGAAAATATAGATAAAGAAATAGAAGAACTAGAAGAAAAATTATCTAAACT
AGAAGAAGAAGTAGAAATAAATGCCTCTGACTTTATGAGACTTGAAGATCTTTTAAAGGAGAAGGATAAAGTTGAGGAAG
AACTATTATTTAAAATGGAAAGACAAGAATACTTAGAAAATCTAGCACAGGAAATAGAGGAAAATAAAAAAACTGTGTAA

Upstream 100 bases:

>100_bases
ATACAATTTATTTTGCAATATTTATGTTTTACTATAAATGTTTTTTATAATAGAATATACATCATAGAGTATAAATTAAA
TTAACAAAAGGATGATTTTA

Downstream 100 bases:

>100_bases
GTAAGTTATGCTACCCGTGGTTTTAAAAACGGATATGTGCTTATAAAGGCAACTCACTTCAATAAGAGATTCTAATTTGT
TTTTTCTTAAAATATATGGC

Product: drug resistance ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 639; Mature: 639

Protein sequence:

>639_residues
MIIVTVENICKSYGEKTLFKDVSFTISDEDKIGLIGVNGTGKSSLLKIVTGEDSPDGGIITIPKGATIEYLDQNPDLDPN
ATILEQVFKGNSKIMSVIGEYEKALDLISKNSEDEKLQNHLLTLTSEMDSLDTWDLESKIKTVLTKLNVTDFDKKIKELS
GGQKKRVALCSALISPCDLLVLDEPTNHMDNDSIDWLENYLQTRKGALLMVTHDRYFLDRVVNKTLELDYGTMYTYNCNY
SQFVEKKAERKALENSLEEKRQSLYKKELEWIRAGVQARGTKQKARIKRFEELGESNFNHNSDDIDISVAHSRLGKKIIN
IENLTKKFEEKTLIKDFNYILLRNDRIGVVGNNGMGKSTLLNIITNKINSDSGSIDIGTTVNIAYFSQHSEDMDPNLRAI
EYIRETAEFITTADGTKISASQMMERFLFTDDMQWCYISKLSGGEKRRLYLLKILMTAPNVLILDEPTNDLDIDTLKVLE
NYIDEFNGPVISVSHDRYFLDRICNKILHFEGNGKISEYIGNYSDFIYRKKEISNITSKEEKTNKALKENNIQKEKTSKL
KFSYKEKLEYENIDKEIEELEEKLSKLEEEVEINASDFMRLEDLLKEKDKVEEELLFKMERQEYLENLAQEIEENKKTV

Sequences:

>Translated_639_residues
MIIVTVENICKSYGEKTLFKDVSFTISDEDKIGLIGVNGTGKSSLLKIVTGEDSPDGGIITIPKGATIEYLDQNPDLDPN
ATILEQVFKGNSKIMSVIGEYEKALDLISKNSEDEKLQNHLLTLTSEMDSLDTWDLESKIKTVLTKLNVTDFDKKIKELS
GGQKKRVALCSALISPCDLLVLDEPTNHMDNDSIDWLENYLQTRKGALLMVTHDRYFLDRVVNKTLELDYGTMYTYNCNY
SQFVEKKAERKALENSLEEKRQSLYKKELEWIRAGVQARGTKQKARIKRFEELGESNFNHNSDDIDISVAHSRLGKKIIN
IENLTKKFEEKTLIKDFNYILLRNDRIGVVGNNGMGKSTLLNIITNKINSDSGSIDIGTTVNIAYFSQHSEDMDPNLRAI
EYIRETAEFITTADGTKISASQMMERFLFTDDMQWCYISKLSGGEKRRLYLLKILMTAPNVLILDEPTNDLDIDTLKVLE
NYIDEFNGPVISVSHDRYFLDRICNKILHFEGNGKISEYIGNYSDFIYRKKEISNITSKEEKTNKALKENNIQKEKTSKL
KFSYKEKLEYENIDKEIEELEEKLSKLEEEVEINASDFMRLEDLLKEKDKVEEELLFKMERQEYLENLAQEIEENKKTV
>Mature_639_residues
MIIVTVENICKSYGEKTLFKDVSFTISDEDKIGLIGVNGTGKSSLLKIVTGEDSPDGGIITIPKGATIEYLDQNPDLDPN
ATILEQVFKGNSKIMSVIGEYEKALDLISKNSEDEKLQNHLLTLTSEMDSLDTWDLESKIKTVLTKLNVTDFDKKIKELS
GGQKKRVALCSALISPCDLLVLDEPTNHMDNDSIDWLENYLQTRKGALLMVTHDRYFLDRVVNKTLELDYGTMYTYNCNY
SQFVEKKAERKALENSLEEKRQSLYKKELEWIRAGVQARGTKQKARIKRFEELGESNFNHNSDDIDISVAHSRLGKKIIN
IENLTKKFEEKTLIKDFNYILLRNDRIGVVGNNGMGKSTLLNIITNKINSDSGSIDIGTTVNIAYFSQHSEDMDPNLRAI
EYIRETAEFITTADGTKISASQMMERFLFTDDMQWCYISKLSGGEKRRLYLLKILMTAPNVLILDEPTNDLDIDTLKVLE
NYIDEFNGPVISVSHDRYFLDRICNKILHFEGNGKISEYIGNYSDFIYRKKEISNITSKEEKTNKALKENNIQKEKTSKL
KFSYKEKLEYENIDKEIEELEEKLSKLEEEVEINASDFMRLEDLLKEKDKVEEELLFKMERQEYLENLAQEIEENKKTV

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=528, Percent_Identity=27.2727272727273, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI27881506, Length=519, Percent_Identity=28.5163776493256, Blast_Score=175, Evalue=1e-43,
Organism=Homo sapiens, GI10947137, Length=519, Percent_Identity=28.5163776493256, Blast_Score=175, Evalue=1e-43,
Organism=Homo sapiens, GI10947135, Length=552, Percent_Identity=26.268115942029, Blast_Score=159, Evalue=6e-39,
Organism=Homo sapiens, GI69354671, Length=552, Percent_Identity=26.268115942029, Blast_Score=159, Evalue=9e-39,
Organism=Homo sapiens, GI153792144, Length=200, Percent_Identity=32, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI2367384, Length=544, Percent_Identity=36.0294117647059, Blast_Score=358, Evalue=1e-100,
Organism=Escherichia coli, GI1787182, Length=636, Percent_Identity=32.3899371069182, Blast_Score=337, Evalue=1e-93,
Organism=Escherichia coli, GI1789751, Length=674, Percent_Identity=29.5252225519288, Blast_Score=282, Evalue=5e-77,
Organism=Escherichia coli, GI1787041, Length=538, Percent_Identity=29.182156133829, Blast_Score=242, Evalue=7e-65,
Organism=Escherichia coli, GI48994943, Length=488, Percent_Identity=23.7704918032787, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1790525, Length=565, Percent_Identity=22.4778761061947, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1788506, Length=559, Percent_Identity=19.6779964221825, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1788165, Length=222, Percent_Identity=26.1261261261261, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1788225, Length=277, Percent_Identity=21.2996389891697, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786872, Length=252, Percent_Identity=24.6031746031746, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=557, Percent_Identity=29.0843806104129, Blast_Score=210, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17553372, Length=523, Percent_Identity=29.8279158699809, Blast_Score=208, Evalue=6e-54,
Organism=Caenorhabditis elegans, GI17555318, Length=559, Percent_Identity=27.3703041144902, Blast_Score=180, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI17565586, Length=210, Percent_Identity=27.6190476190476, Blast_Score=74, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6320874, Length=528, Percent_Identity=30.4924242424242, Blast_Score=206, Evalue=1e-53,
Organism=Saccharomyces cerevisiae, GI6321121, Length=560, Percent_Identity=28.2142857142857, Blast_Score=191, Evalue=2e-49,
Organism=Saccharomyces cerevisiae, GI6324314, Length=394, Percent_Identity=25.6345177664975, Blast_Score=114, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6323278, Length=385, Percent_Identity=25.974025974026, Blast_Score=113, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6325030, Length=425, Percent_Identity=25.1764705882353, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24666836, Length=548, Percent_Identity=29.7445255474453, Blast_Score=219, Evalue=7e-57,
Organism=Drosophila melanogaster, GI24641342, Length=556, Percent_Identity=28.5971223021583, Blast_Score=194, Evalue=2e-49,
Organism=Drosophila melanogaster, GI24642252, Length=563, Percent_Identity=27.708703374778, Blast_Score=190, Evalue=3e-48,
Organism=Drosophila melanogaster, GI18859989, Length=563, Percent_Identity=27.708703374778, Blast_Score=190, Evalue=3e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 73470; Mature: 73470

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIVTVENICKSYGEKTLFKDVSFTISDEDKIGLIGVNGTGKSSLLKIVTGEDSPDGGII
CEEEEHHHHHHHHCCHHHHHCCEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCEE
TIPKGATIEYLDQNPDLDPNATILEQVFKGNSKIMSVIGEYEKALDLISKNSEDEKLQNH
ECCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LLTLTSEMDSLDTWDLESKIKTVLTKLNVTDFDKKIKELSGGQKKRVALCSALISPCDLL
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEE
VLDEPTNHMDNDSIDWLENYLQTRKGALLMVTHDRYFLDRVVNKTLELDYGTMYTYNCNY
EECCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHEEECCCEEEEEECCH
SQFVEKKAERKALENSLEEKRQSLYKKELEWIRAGVQARGTKQKARIKRFEELGESNFNH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
NSDDIDISVAHSRLGKKIINIENLTKKFEEKTLIKDFNYILLRNDRIGVVGNNGMGKSTL
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCHHHH
LNIITNKINSDSGSIDIGTTVNIAYFSQHSEDMDPNLRAIEYIRETAEFITTADGTKISA
HHHHHHHCCCCCCCEEECCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECH
SQMMERFLFTDDMQWCYISKLSGGEKRRLYLLKILMTAPNVLILDEPTNDLDIDTLKVLE
HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
NYIDEFNGPVISVSHDRYFLDRICNKILHFEGNGKISEYIGNYSDFIYRKKEISNITSKE
HHHHHHCCCEEEEECCHHHHHHHHHHHEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHH
EKTNKALKENNIQKEKTSKLKFSYKEKLEYENIDKEIEELEEKLSKLEEEVEINASDFMR
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LEDLLKEKDKVEEELLFKMERQEYLENLAQEIEENKKTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIIVTVENICKSYGEKTLFKDVSFTISDEDKIGLIGVNGTGKSSLLKIVTGEDSPDGGII
CEEEEHHHHHHHHCCHHHHHCCEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCEE
TIPKGATIEYLDQNPDLDPNATILEQVFKGNSKIMSVIGEYEKALDLISKNSEDEKLQNH
ECCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LLTLTSEMDSLDTWDLESKIKTVLTKLNVTDFDKKIKELSGGQKKRVALCSALISPCDLL
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEE
VLDEPTNHMDNDSIDWLENYLQTRKGALLMVTHDRYFLDRVVNKTLELDYGTMYTYNCNY
EECCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHEEECCCEEEEEECCH
SQFVEKKAERKALENSLEEKRQSLYKKELEWIRAGVQARGTKQKARIKRFEELGESNFNH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
NSDDIDISVAHSRLGKKIINIENLTKKFEEKTLIKDFNYILLRNDRIGVVGNNGMGKSTL
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCHHHH
LNIITNKINSDSGSIDIGTTVNIAYFSQHSEDMDPNLRAIEYIRETAEFITTADGTKISA
HHHHHHHCCCCCCCEEECCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECH
SQMMERFLFTDDMQWCYISKLSGGEKRRLYLLKILMTAPNVLILDEPTNDLDIDTLKVLE
HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
NYIDEFNGPVISVSHDRYFLDRICNKILHFEGNGKISEYIGNYSDFIYRKKEISNITSKE
HHHHHHCCCEEEEECCHHHHHHHHHHHEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHH
EKTNKALKENNIQKEKTSKLKFSYKEKLEYENIDKEIEELEEKLSKLEEEVEINASDFMR
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LEDLLKEKDKVEEELLFKMERQEYLENLAQEIEENKKTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]