| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755990
Identifier: 170755990
GI number: 170755990
Start: 1370667
End: 1371407
Strand: Reverse
Name: 170755990
Synonym: CLD_3330
Alternate gene names: NA
Gene position: 1371407-1370667 (Counterclockwise)
Preceding gene: 170754457
Following gene: 170755182
Centisome position: 34.65
GC content: 28.07
Gene sequence:
>741_bases ATGAGTAAAAATCATAAATTTGATAAACACTTTAATAATTTGAACGAAGAAAATCAAGAAAAGTATATAGAAGAAATGCA TGAAATGGCAGATAAAGCTGCGAAGAAAAATAATTTAATCTTTGGAGCTGTAGTTATACCTATTGTGATTGTTTGTATAT TAGTTGTTAAACAAATGGTTTCTTTCTCCTTTAATTTAGCTAAAGATGATAGCGCAACTAAAAATAATAACACTGAAATA ACTAAAGATGTGAACAATAATAGTAAAGGAACAGGCCAAGAAATTGCTTTAAATGAAAAAATAGCTAAATATATACAAAA TAAAGATAATAGACAAAAATCCTTTAAAGAGGCAGTGTCTATAAATAAAGGTAGTGAAAAAGGCGTTTCTGTAATATTTA TATCTCAATTATACAGAAGCAACGGATATGATATACCAAAAAATACTATAAGTACTAAGGGATTATTAGAAGATCTAAAG AAAAAGAATTGGACAAAAGAAACAGATTACACTAAACTACAAAAAGGTGATATTTGTTTTACTACTGTAGATAGTGCTGG CTCTCCATCCCATGCGTATATTTTTATGGGTTGGGTAAAAGAAGGAAAAACAGATTATGCTTATGTTTGCGATGGACAAA CTTCTGATTACGATGATACATTACACAAAAGAAATTTAAGTGTTTCTACAGCAGAAAAAGATAAAATAGCTTTCTTTATG AAAGCTCCTAATGAGAAATAA
Upstream 100 bases:
>100_bases TACTTAATATAATTTATCTGCTACAATTATAAAGTAATATATTTTGTTATATTGTTATATTTTAACTGAAATAAATATTT TCATATAAGGAAGGATAAAT
Downstream 100 bases:
>100_bases TTATTAAAGCTAGTCTTAATAGACTAGCTTTTTAATATAATTTTTTATCTTATATTCATAAAAAAAATGCCCTTCACCTA AATATTATTTATTTAGGTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MSKNHKFDKHFNNLNEENQEKYIEEMHEMADKAAKKNNLIFGAVVIPIVIVCILVVKQMVSFSFNLAKDDSATKNNNTEI TKDVNNNSKGTGQEIALNEKIAKYIQNKDNRQKSFKEAVSINKGSEKGVSVIFISQLYRSNGYDIPKNTISTKGLLEDLK KKNWTKETDYTKLQKGDICFTTVDSAGSPSHAYIFMGWVKEGKTDYAYVCDGQTSDYDDTLHKRNLSVSTAEKDKIAFFM KAPNEK
Sequences:
>Translated_246_residues MSKNHKFDKHFNNLNEENQEKYIEEMHEMADKAAKKNNLIFGAVVIPIVIVCILVVKQMVSFSFNLAKDDSATKNNNTEI TKDVNNNSKGTGQEIALNEKIAKYIQNKDNRQKSFKEAVSINKGSEKGVSVIFISQLYRSNGYDIPKNTISTKGLLEDLK KKNWTKETDYTKLQKGDICFTTVDSAGSPSHAYIFMGWVKEGKTDYAYVCDGQTSDYDDTLHKRNLSVSTAEKDKIAFFM KAPNEK >Mature_245_residues SKNHKFDKHFNNLNEENQEKYIEEMHEMADKAAKKNNLIFGAVVIPIVIVCILVVKQMVSFSFNLAKDDSATKNNNTEIT KDVNNNSKGTGQEIALNEKIAKYIQNKDNRQKSFKEAVSINKGSEKGVSVIFISQLYRSNGYDIPKNTISTKGLLEDLKK KNWTKETDYTKLQKGDICFTTVDSAGSPSHAYIFMGWVKEGKTDYAYVCDGQTSDYDDTLHKRNLSVSTAEKDKIAFFMK APNEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27864; Mature: 27733
Theoretical pI: Translated: 8.96; Mature: 8.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKNHKFDKHFNNLNEENQEKYIEEMHEMADKAAKKNNLIFGAVVIPIVIVCILVVKQMV CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHH SFSFNLAKDDSATKNNNTEITKDVNNNSKGTGQEIALNEKIAKYIQNKDNRQKSFKEAVS HHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH INKGSEKGVSVIFISQLYRSNGYDIPKNTISTKGLLEDLKKKNWTKETDYTKLQKGDICF CCCCCCCCEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEE TTVDSAGSPSHAYIFMGWVKEGKTDYAYVCDGQTSDYDDTLHKRNLSVSTAEKDKIAFFM EECCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEEE KAPNEK ECCCCC >Mature Secondary Structure SKNHKFDKHFNNLNEENQEKYIEEMHEMADKAAKKNNLIFGAVVIPIVIVCILVVKQMV CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHH SFSFNLAKDDSATKNNNTEITKDVNNNSKGTGQEIALNEKIAKYIQNKDNRQKSFKEAVS HHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH INKGSEKGVSVIFISQLYRSNGYDIPKNTISTKGLLEDLKKKNWTKETDYTKLQKGDICF CCCCCCCCEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEE TTVDSAGSPSHAYIFMGWVKEGKTDYAYVCDGQTSDYDDTLHKRNLSVSTAEKDKIAFFM EECCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEEE KAPNEK ECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA