Definition | Clostridium botulinum B1 str. Okra, complete genome. |
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Accession | NC_010516 |
Length | 3,958,233 |
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The map label for this gene is 170755954
Identifier: 170755954
GI number: 170755954
Start: 1358233
End: 1359048
Strand: Reverse
Name: 170755954
Synonym: CLD_3345
Alternate gene names: NA
Gene position: 1359048-1358233 (Counterclockwise)
Preceding gene: 170756050
Following gene: 170755271
Centisome position: 34.33
GC content: 28.06
Gene sequence:
>816_bases ATGAAAAAAAATTTTTTCCCTTTAATATTTTTGTTAGTTTTATGTCTTTGCCCTATTTCATTAGCTCATGCTGAATCAGG AAGAATAACTTTAAACAAAGTAACCTCTTCTCCTGAAATAATAGAACCTGGTAGTAAATTTAAGATTAATTTTTCTATAA CTAATAATAAAGAAACTAATCTAAAGGATGTAGTTATAACCTTAGTTGGTTCAGAAGATAAAAAAGTCTTAACAGGTTTT TCTCCTGTTGGAAGTACCAATGAAATCTATGTAGGTCATATAGATGGTGAAACTTCTAAGGATGCAACTATAGAGATGGC CTGTGATCCTAATTTAAAAGCTGGCAATTATAATATTTTAGTTAAAATAGGTTATAAATTATATGGAGAATATGTAGAAG AAACTAGAATAATAGGCTTAATCTTAGGAAATAAGCCTAATCTACTTATAACCTCTCTAGATGCCTCTAATAAGGATGGA GAAGGCAAAAAATTATCATTGAACTTTGTTAATAGTGGTAAATCTACTTTAAAAGATGTAATGGTAAATATTAAAGCTAA AGATAAGACCTTCACTAAATATTTTGGCACTATGGAATCAGAAGATGAAAATGAATTTAAACAAGATTTAAATTTATCTG GTGATATAAAAGGCACTGTAGAAATAAGCTTTAAAGACGAATTAAACAAACCTTCTAAAGTTTCACAAGAATTCTCTATT AAAGGAAAGATTGACGACACTAATACTGTAAAAAAAGAAAAAAAGAGTTCTGGTATACTAGGTTTTTTTAAAGGCCTATT AGGAATAGGTGATTAA
Upstream 100 bases:
>100_bases TCAGGTTTGTGATTATGCAAATAAAATAATAAAAGTGGTAGATGGAAAAGTATTGAATAACTAATTACCCTATGTAAAAT TATTTAGGAGGTGCACAATA
Downstream 100 bases:
>100_bases TATGAAGCTTACTGACCTTGCAGAAATTATATGGAGAAACCTTTTAAAAAGAAAAGGAAGAACATTTTTAACTATGCTCG GAGTAATTATAGGTAGTATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 271; Mature: 271
Protein sequence:
>271_residues MKKNFFPLIFLLVLCLCPISLAHAESGRITLNKVTSSPEIIEPGSKFKINFSITNNKETNLKDVVITLVGSEDKKVLTGF SPVGSTNEIYVGHIDGETSKDATIEMACDPNLKAGNYNILVKIGYKLYGEYVEETRIIGLILGNKPNLLITSLDASNKDG EGKKLSLNFVNSGKSTLKDVMVNIKAKDKTFTKYFGTMESEDENEFKQDLNLSGDIKGTVEISFKDELNKPSKVSQEFSI KGKIDDTNTVKKEKKSSGILGFFKGLLGIGD
Sequences:
>Translated_271_residues MKKNFFPLIFLLVLCLCPISLAHAESGRITLNKVTSSPEIIEPGSKFKINFSITNNKETNLKDVVITLVGSEDKKVLTGF SPVGSTNEIYVGHIDGETSKDATIEMACDPNLKAGNYNILVKIGYKLYGEYVEETRIIGLILGNKPNLLITSLDASNKDG EGKKLSLNFVNSGKSTLKDVMVNIKAKDKTFTKYFGTMESEDENEFKQDLNLSGDIKGTVEISFKDELNKPSKVSQEFSI KGKIDDTNTVKKEKKSSGILGFFKGLLGIGD >Mature_271_residues MKKNFFPLIFLLVLCLCPISLAHAESGRITLNKVTSSPEIIEPGSKFKINFSITNNKETNLKDVVITLVGSEDKKVLTGF SPVGSTNEIYVGHIDGETSKDATIEMACDPNLKAGNYNILVKIGYKLYGEYVEETRIIGLILGNKPNLLITSLDASNKDG EGKKLSLNFVNSGKSTLKDVMVNIKAKDKTFTKYFGTMESEDENEFKQDLNLSGDIKGTVEISFKDELNKPSKVSQEFSI KGKIDDTNTVKKEKKSSGILGFFKGLLGIGD
Specific function: Unknown
COG id: COG1361
COG function: function code M; S-layer domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29751; Mature: 29751
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNFFPLIFLLVLCLCPISLAHAESGRITLNKVTSSPEIIEPGSKFKINFSITNNKETN CCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCEECCCCEEEEEEEEECCCCCC LKDVVITLVGSEDKKVLTGFSPVGSTNEIYVGHIDGETSKDATIEMACDPNLKAGNYNIL CEEEEEEEECCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCEEEE VKIGYKLYGEYVEETRIIGLILGNKPNLLITSLDASNKDGEGKKLSLNFVNSGKSTLKDV EEECHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCHHHHHHH MVNIKAKDKTFTKYFGTMESEDENEFKQDLNLSGDIKGTVEISFKDELNKPSKVSQEFSI EEEEECCCCEEHHHHCCCCCCCHHHHHHHCCCCCCCEEEEEEEEHHHCCCCCCCCCCEEE KGKIDDTNTVKKEKKSSGILGFFKGLLGIGD EEECCCCHHHHHHHHCCCHHHHHHHHHCCCC >Mature Secondary Structure MKKNFFPLIFLLVLCLCPISLAHAESGRITLNKVTSSPEIIEPGSKFKINFSITNNKETN CCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCEECCCCEEEEEEEEECCCCCC LKDVVITLVGSEDKKVLTGFSPVGSTNEIYVGHIDGETSKDATIEMACDPNLKAGNYNIL CEEEEEEEECCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCEEEE VKIGYKLYGEYVEETRIIGLILGNKPNLLITSLDASNKDGEGKKLSLNFVNSGKSTLKDV EEECHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCHHHHHHH MVNIKAKDKTFTKYFGTMESEDENEFKQDLNLSGDIKGTVEISFKDELNKPSKVSQEFSI EEEEECCCCEEHHHHCCCCCCCHHHHHHHCCCCCCCEEEEEEEEHHHCCCCCCCCCCEEE KGKIDDTNTVKKEKKSSGILGFFKGLLGIGD EEECCCCHHHHHHHHCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA