Click here to switch to the map view.

The map label for this gene is rhiR [H]

Identifier: 170752129

GI number: 170752129

Start: 6071926

End: 6072654

Strand: Direct

Name: rhiR [H]

Synonym: Mrad2831_5762

Alternate gene names: 170752129

Gene position: 6071926-6072654 (Clockwise)

Preceding gene: 170752127

Following gene: 170752130

Centisome position: 99.9

GC content: 70.92

Gene sequence:

>729_bases
ATGCCGCATTCAAAGCACCTGGACAGGACCTTCAGCGTGTTGCGCGACCTGGAACGTGCGGCCACGCCCGACGAGATCGC
GCGGCTCCTGGTCGAGGCGTTCAGCCGCTACGGAGTCTCGTACATCATGGCCGGGATCGTCCCGGACCCCGGCCTGCCGA
AGCGGCGGCACGCCGGGTTCGTGCTCGCCAGCACCATGCCGGAGGGCTGGGCCCGCCGGTACGTGACGCAGGGCTACGCG
CTTCACGATCCCACGGTCCGGCGGCTGTGCACCACGGCGACGCCCTTCGACTGGAATGCCGTGCTGCCGGATACCCCGAC
GGCCGGGCGCGTCATGAACGAGGCCGGTGAATTCGGCATCCGCGCGGGCATCACGGTTCCGTTCGTGACCCTCGACGGCG
AGCCGGGCGGGATCAGCGTCTCGGGGGAGCGGATCGAGATCGATCCGGCCGAGCGCGTCGCGGTCAACCTCGTGGCGACC
TACGCGGTCGGTCAACTGCTGCTGATGAACAGCCGGCCGGCCGCCCCGGCGCCGGCGCGCCTCTCGCCGCGGGAGCGCGA
AGCCCTGCAGTGGGCGGCGGAGGGCAAGACCGACGTCGAGATCGGCATGGTCATGGGCATCACGGCCGCCGGCGTCGACT
ACCATCTGCGCTCGGCCCGCGCGAAGCTCGACACCGTCAACCGCGCCCACACCGTGGCGCAGGCGCTGCGGTCCGGTCTG
ATAACCTAG

Upstream 100 bases:

>100_bases
TTCCGCGGACAGCCTAGCCTTTCAGGGGCGACGATGCCATCCTCAGGTTGCGTTCGACTCATCATTTGTCGCAGTGCGTG
CATCAATTTCGAGTTAGGGC

Downstream 100 bases:

>100_bases
AGACCACGCCACCCGATCCGCGCCCGTCTCGGCTAACACGGGCGGACGTGTTCCAGATGGCAGCAAGTCCTTGGTGCCAC
AGCAGGGCGGGCGCACAGAC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MPHSKHLDRTFSVLRDLERAATPDEIARLLVEAFSRYGVSYIMAGIVPDPGLPKRRHAGFVLASTMPEGWARRYVTQGYA
LHDPTVRRLCTTATPFDWNAVLPDTPTAGRVMNEAGEFGIRAGITVPFVTLDGEPGGISVSGERIEIDPAERVAVNLVAT
YAVGQLLLMNSRPAAPAPARLSPREREALQWAAEGKTDVEIGMVMGITAAGVDYHLRSARAKLDTVNRAHTVAQALRSGL
IT

Sequences:

>Translated_242_residues
MPHSKHLDRTFSVLRDLERAATPDEIARLLVEAFSRYGVSYIMAGIVPDPGLPKRRHAGFVLASTMPEGWARRYVTQGYA
LHDPTVRRLCTTATPFDWNAVLPDTPTAGRVMNEAGEFGIRAGITVPFVTLDGEPGGISVSGERIEIDPAERVAVNLVAT
YAVGQLLLMNSRPAAPAPARLSPREREALQWAAEGKTDVEIGMVMGITAAGVDYHLRSARAKLDTVNRAHTVAQALRSGL
IT
>Mature_241_residues
PHSKHLDRTFSVLRDLERAATPDEIARLLVEAFSRYGVSYIMAGIVPDPGLPKRRHAGFVLASTMPEGWARRYVTQGYAL
HDPTVRRLCTTATPFDWNAVLPDTPTAGRVMNEAGEFGIRAGITVPFVTLDGEPGGISVSGERIEIDPAERVAVNLVATY
AVGQLLLMNSRPAAPAPARLSPREREALQWAAEGKTDVEIGMVMGITAAGVDYHLRSARAKLDTVNRAHTVAQALRSGLI
T

Specific function: Positive regulator of the rhiABC operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=183, Percent_Identity=25.6830601092896, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26207; Mature: 26076

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHSKHLDRTFSVLRDLERAATPDEIARLLVEAFSRYGVSYIMAGIVPDPGLPKRRHAGF
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCE
VLASTMPEGWARRYVTQGYALHDPTVRRLCTTATPFDWNAVLPDTPTAGRVMNEAGEFGI
EEECCCCHHHHHHHHHCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCE
RAGITVPFVTLDGEPGGISVSGERIEIDPAERVAVNLVATYAVGQLLLMNSRPAAPAPAR
ECCCEEEEEEECCCCCCEEECCCEEEECHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC
LSPREREALQWAAEGKTDVEIGMVMGITAAGVDYHLRSARAKLDTVNRAHTVAQALRSGL
CCCHHHHHHHHHHCCCCCEEEHHEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IT
CC
>Mature Secondary Structure 
PHSKHLDRTFSVLRDLERAATPDEIARLLVEAFSRYGVSYIMAGIVPDPGLPKRRHAGF
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCE
VLASTMPEGWARRYVTQGYALHDPTVRRLCTTATPFDWNAVLPDTPTAGRVMNEAGEFGI
EEECCCCHHHHHHHHHCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCE
RAGITVPFVTLDGEPGGISVSGERIEIDPAERVAVNLVATYAVGQLLLMNSRPAAPAPAR
ECCCEEEEEEECCCCCCEEECCCEEEECHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC
LSPREREALQWAAEGKTDVEIGMVMGITAAGVDYHLRSARAKLDTVNRAHTVAQALRSGL
CCCHHHHHHHHHHCCCCCEEEHHEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IT
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]