BacMap

Definition	Methylobacterium radiotolerans JCM 2831 chromosome, complete genome.
Accession	NC_010505
Length	6,077,833

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The map label for this gene is ykvO [H]

Identifier: 170751868

GI number: 170751868

Start: 5813430

End: 5814182

Strand: Direct

Name: ykvO [H]

Synonym: Mrad2831_5500

Alternate gene names: 170751868

Gene position: 5813430-5814182 (Clockwise)

Preceding gene: 170751866

Following gene: 170751869

Centisome position: 95.65

GC content: 69.59

Gene sequence:

>753_bases
ATGGCTGGCAGGTTTCAGGACAAGGTTGTGGTGGTGACCGGCGGCACCAGCGGCATCGGCCTCGCCACCGCCAAGGCCTT
CGTGGCCGAGGGGGCCTCGGTGTTCATCACCGGGCGCCGCCAGGAGACCCTCGACGCGGCGTTGAAGCAGATCGGCGGCC
GGATCACCGGTGTGCGCGGCGACATGGCGAACCTCGCCGACATCGACCGCCTGTACGATACGGTCCAGCAGAGGCACGCG
CAGATCGACGTGATCTTCGCCAACGCCGGCGGCGGCACCTTCGCGCCATTGGGCGCGATCACCGAGGCGCACTACCAGAG
CATCTTCGACACCAACGTGAAGGGCGTGCTCTTCACCGTCCAGAAGGCGCTGCCGCTGCTGCGGGACGGGGCCGCGATCG
TGCTCACCGGCTCGACCGCCGGCAGCTCCGGGACGCCCGGCTTCAGCGTCTACTCGGCCACCAAGGCGGCGGTGCGAAAC
TTCGCCCGGAACTGGATCCTCGACCTGAAGGACCGACGCATCCGGGTGAACACGATCAGCCCGGGCGTGACCGAGACCGC
CGGGCTCGACGAGCTCTTCGGCGGCGGCGATCAGGCGGCGGCCACCAAGGATTTCCTCGCCGGCCAGATCCCGGCCGGCC
GCGTCGGCCGGCCCGAGGAGATCGCGCAGGCGGTCCTGTTCCTCGCCTCGGACGCGGCGAGCTTCATCAACGGCGTCGAG
CTGTTCGCCGATGGCGGGCAGGTCCAGATCTGA

Upstream 100 bases:

>100_bases
TGGAACGCTGGGTGCCACATTCGCGGGCTACCCGCATCATCGTTCCGGCGGCATCTCTCCGGCCAGCGGCGCATACGGGG
CCGCAGCACGGAGAACGACG

Downstream 100 bases:

>100_bases
GGATCCGGGTCGGCCGGGACGCGACACCCGGTCCCGGCCGCCGGGGTGAACCCTAACAATGGCCGGCGGTTTAAGGCCCG
GCCCTCCGGTCCCGCTTCGT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MAGRFQDKVVVVTGGTSGIGLATAKAFVAEGASVFITGRRQETLDAALKQIGGRITGVRGDMANLADIDRLYDTVQQRHA
QIDVIFANAGGGTFAPLGAITEAHYQSIFDTNVKGVLFTVQKALPLLRDGAAIVLTGSTAGSSGTPGFSVYSATKAAVRN
FARNWILDLKDRRIRVNTISPGVTETAGLDELFGGGDQAAATKDFLAGQIPAGRVGRPEEIAQAVLFLASDAASFINGVE
LFADGGQVQI

Sequences:

>Translated_250_residues
MAGRFQDKVVVVTGGTSGIGLATAKAFVAEGASVFITGRRQETLDAALKQIGGRITGVRGDMANLADIDRLYDTVQQRHA
QIDVIFANAGGGTFAPLGAITEAHYQSIFDTNVKGVLFTVQKALPLLRDGAAIVLTGSTAGSSGTPGFSVYSATKAAVRN
FARNWILDLKDRRIRVNTISPGVTETAGLDELFGGGDQAAATKDFLAGQIPAGRVGRPEEIAQAVLFLASDAASFINGVE
LFADGGQVQI
>Mature_249_residues
AGRFQDKVVVVTGGTSGIGLATAKAFVAEGASVFITGRRQETLDAALKQIGGRITGVRGDMANLADIDRLYDTVQQRHAQ
IDVIFANAGGGTFAPLGAITEAHYQSIFDTNVKGVLFTVQKALPLLRDGAAIVLTGSTAGSSGTPGFSVYSATKAAVRNF
ARNWILDLKDRRIRVNTISPGVTETAGLDELFGGGDQAAATKDFLAGQIPAGRVGRPEEIAQAVLFLASDAASFINGVEL
FADGGQVQI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=31.0483870967742, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=27.843137254902, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=28.2868525896414, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI5031737, Length=242, Percent_Identity=29.3388429752066, Blast_Score=101, Evalue=8e-22,
Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=31.8725099601594, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=29.7520661157025, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=30.3867403314917, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI66933014, Length=248, Percent_Identity=30.6451612903226, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI109715829, Length=247, Percent_Identity=29.1497975708502, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=28.9473684210526, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI7705925, Length=240, Percent_Identity=28.75, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI59889578, Length=225, Percent_Identity=30.6666666666667, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI4503301, Length=254, Percent_Identity=29.5275590551181, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI7657478, Length=242, Percent_Identity=29.3388429752066, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=26.1538461538462, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI4758504, Length=252, Percent_Identity=26.5873015873016, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI223718074, Length=241, Percent_Identity=27.8008298755187, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1789378, Length=242, Percent_Identity=31.404958677686, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=31.3253012048193, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1787820, Length=238, Percent_Identity=31.0924369747899, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=29.4820717131474, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=26.1904761904762, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=27.6422764227642, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=29.3650793650794, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=30.327868852459, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=29.2682926829268, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=26.5060240963855, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786701, Length=195, Percent_Identity=30.7692307692308, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=26.1904761904762, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787526, Length=196, Percent_Identity=29.5918367346939, Blast_Score=70, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=34.2307692307692, Blast_Score=124, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=32.6923076923077, Blast_Score=123, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=33.0645161290323, Blast_Score=121, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=35.6060606060606, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=31.6, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=34.7328244274809, Blast_Score=120, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=33.4586466165414, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=32.3076923076923, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=32.4427480916031, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=32.3076923076923, Blast_Score=107, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=35.632183908046, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=33.4615384615385, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=30.9963099630996, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=32.319391634981, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17551412, Length=275, Percent_Identity=31.6363636363636, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=31.25, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=29.6577946768061, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=30.1960784313725, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=31.5384615384615, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=28.9156626506024, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=30, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17561272, Length=240, Percent_Identity=30.4166666666667, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=28.515625, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=28.740157480315, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=29.4354838709677, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=27.6679841897233, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI193207185, Length=141, Percent_Identity=34.7517730496454, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=191, Percent_Identity=27.7486910994764, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=26.984126984127, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=256, Percent_Identity=27.734375, Blast_Score=86, Evalue=6e-18,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=31.1224489795918, Blast_Score=82, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6322227, Length=192, Percent_Identity=27.6041666666667, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=181, Percent_Identity=30.939226519337, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=260, Percent_Identity=25.7692307692308, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=34.1176470588235, Blast_Score=123, Evalue=9e-29,
Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=32.8063241106719, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=9e-27,
Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=33.0677290836653, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=32.0987654320988, Blast_Score=114, Evalue=5e-26,
Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=32.6771653543307, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=33.8645418326693, Blast_Score=100, Evalue=9e-22,
Organism=Drosophila melanogaster, GI24641232, Length=242, Percent_Identity=28.5123966942149, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=28.8617886178862, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007236, Length=205, Percent_Identity=27.3170731707317, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=28.515625, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24663911, Length=244, Percent_Identity=25.4098360655738, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24640492, Length=188, Percent_Identity=27.1276595744681, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI116007238, Length=187, Percent_Identity=25.668449197861, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007234, Length=207, Percent_Identity=26.5700483091787, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281364494, Length=206, Percent_Identity=27.6699029126214, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI161076933, Length=182, Percent_Identity=27.4725274725275, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24584748, Length=182, Percent_Identity=27.4725274725275, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21358495, Length=229, Percent_Identity=25.3275109170306, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26000; Mature: 25869

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRFQDKVVVVTGGTSGIGLATAKAFVAEGASVFITGRRQETLDAALKQIGGRITGVRG
CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCEEEECCC
DMANLADIDRLYDTVQQRHAQIDVIFANAGGGTFAPLGAITEAHYQSIFDTNVKGVLFTV
CHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHEEEH
QKALPLLRDGAAIVLTGSTAGSSGTPGFSVYSATKAAVRNFARNWILDLKDRRIRVNTIS
HHHHHHHHCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHEEECCCCEEEEEECC
PGVTETAGLDELFGGGDQAAATKDFLAGQIPAGRVGRPEEIAQAVLFLASDAASFINGVE
CCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH
LFADGGQVQI
EEECCCEEEC
>Mature Secondary Structure 
AGRFQDKVVVVTGGTSGIGLATAKAFVAEGASVFITGRRQETLDAALKQIGGRITGVRG
CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCEEEECCC
DMANLADIDRLYDTVQQRHAQIDVIFANAGGGTFAPLGAITEAHYQSIFDTNVKGVLFTV
CHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHEEEH
QKALPLLRDGAAIVLTGSTAGSSGTPGFSVYSATKAAVRNFARNWILDLKDRRIRVNTIS
HHHHHHHHCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHEEECCCCEEEEEECC
PGVTETAGLDELFGGGDQAAATKDFLAGQIPAGRVGRPEEIAQAVLFLASDAASFINGVE
CCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH
LFADGGQVQI
EEECCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]