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The map label for this gene is rpoE [H]

Identifier: 170751634

GI number: 170751634

Start: 5580752

End: 5581261

Strand: Direct

Name: rpoE [H]

Synonym: Mrad2831_5260

Alternate gene names: 170751634

Gene position: 5580752-5581261 (Clockwise)

Preceding gene: 170751633

Following gene: 170751635

Centisome position: 91.82

GC content: 71.96

Gene sequence:

>510_bases
TTGGACGAGATCGCCGCCCTGATCGAACCGCAGATCCCGGCCCTGCGGCGCTACGCGGTCGCGCTGCTTCGGGATCGCGA
AGCGGCGGACGACCTCGTCCAGGACACCCTGGAGCGGGCATTGTCCGCTTGGTCCGGGCGTCGCCGCGACGGCGACCTGC
GGGCGTGGTTGTTCACGATCGAGCGCAACCTGTTCCTGGCCGCCGTCCGGCGCCGGGGCCGGCGCGGCGCCGATCTCGGC
GCGGAAGCGTTGGAGCAGGTGCCGGATCCGAGCGCCGACCCGGGGGCAGCTTTGGGAGCCCGCGACGTGCTCGCCGGGCT
CGACACCCTGCCCGAGGAGCAGCGCTCGGTGCTGCTCCTCGTGGCGGTGGAGGACCTGTCCTATGCCGAGGCGGCACAGG
TGCTCGGGGTGCCGCTCGGCACGGTGATGTCGCGATTGAGCCGGGCGCGCACGCGGATGCGCGGATTTCTGGAGACGGGC
CGGACAGGCCTGCTGAGGAGGGTTAAATGA

Upstream 100 bases:

>100_bases
GGCGACACCACCGGTGACGGCTTCCTCAACGGTGCGTGGCACATCGCCAAGCCCTGATCGGTGAATGCCCGGATCGGCTC
CTTCTGATTGGGACACGTCG

Downstream 100 bases:

>100_bases
GCGGGGATCCGCGCCCGGTCGGCGAGGACGACCTGCACGGCCTGATCGACGGCCGCCTTGAACCGGAGCGGCAGGCGCTG
GTCGAGGCGTGGCTCGCGGG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MDEIAALIEPQIPALRRYAVALLRDREAADDLVQDTLERALSAWSGRRRDGDLRAWLFTIERNLFLAAVRRRGRRGADLG
AEALEQVPDPSADPGAALGARDVLAGLDTLPEEQRSVLLLVAVEDLSYAEAAQVLGVPLGTVMSRLSRARTRMRGFLETG
RTGLLRRVK

Sequences:

>Translated_169_residues
MDEIAALIEPQIPALRRYAVALLRDREAADDLVQDTLERALSAWSGRRRDGDLRAWLFTIERNLFLAAVRRRGRRGADLG
AEALEQVPDPSADPGAALGARDVLAGLDTLPEEQRSVLLLVAVEDLSYAEAAQVLGVPLGTVMSRLSRARTRMRGFLETG
RTGLLRRVK
>Mature_169_residues
MDEIAALIEPQIPALRRYAVALLRDREAADDLVQDTLERALSAWSGRRRDGDLRAWLFTIERNLFLAAVRRRGRRGADLG
AEALEQVPDPSADPGAALGARDVLAGLDTLPEEQRSVLLLVAVEDLSYAEAAQVLGVPLGTVMSRLSRARTRMRGFLETG
RTGLLRRVK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18599; Mature: 18599

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEIAALIEPQIPALRRYAVALLRDREAADDLVQDTLERALSAWSGRRRDGDLRAWLFTI
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
ERNLFLAAVRRRGRRGADLGAEALEQVPDPSADPGAALGARDVLAGLDTLPEEQRSVLLL
HHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCEEEE
VAVEDLSYAEAAQVLGVPLGTVMSRLSRARTRMRGFLETGRTGLLRRVK
EEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC
>Mature Secondary Structure
MDEIAALIEPQIPALRRYAVALLRDREAADDLVQDTLERALSAWSGRRRDGDLRAWLFTI
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
ERNLFLAAVRRRGRRGADLGAEALEQVPDPSADPGAALGARDVLAGLDTLPEEQRSVLLL
HHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCEEEE
VAVEDLSYAEAAQVLGVPLGTVMSRLSRARTRMRGFLETGRTGLLRRVK
EEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]