BacMap

Definition	Methylobacterium radiotolerans JCM 2831 chromosome, complete genome.
Accession	NC_010505
Length	6,077,833

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The map label for this gene is yxnA [H]

Identifier: 170751521

GI number: 170751521

Start: 5465785

End: 5466798

Strand: Reverse

Name: yxnA [H]

Synonym: Mrad2831_5141

Alternate gene names: 170751521

Gene position: 5466798-5465785 (Counterclockwise)

Preceding gene: 170751522

Following gene: 170751520

Centisome position: 89.95

GC content: 73.08

Gene sequence:

>1014_bases
ATGAAGCACAAGCCGCTCCGCGAGCAGGTCATCGTGATCACCGGCGCCTCGTCGGGTATCGGCCTCGCCACGGCCCGGAT
GGCGGCCGAGCGCGGCGCCCGGGTGGTGCTGGCGGCGCGCAGCGGCGACGCCCTGGCGCGCATCCGCGCCGAGATCGAGG
GCGTCGGCGGCAAGGCGATCGACGTCGTCGCCGATGTCGGCCGGCGGGCCGACGTGCAGGCCGTCGCCGACCGGGCCGAG
GCGACCTTCGGCGGCTTCGACACCTGGGTGAACGTGGCCGGCGGCTCGATCTACGGCCGGCTGCGCGAGATCAGCGATGC
CGACCACGAGCGCCTGATCCAGACGAATTTCTGGGGAACCGTCTACGGTTCCCTGGTGGCGACCGAGCACCTGCGCCAGC
ACGGCGGCGCCCTCATCAACGTCGGCAGTATCGCCTCCGACCTCGCCTTCCCGTTCCAGGGCATGTACGCGGCCTCGAAA
CACGCCGTGAAGGGCTTCACCGACGCCCTGCGCATGGAGTTGATGGACGAGAACGCGCCGATCTCGGTGACGCTGATCAA
GCCGGCCTCGATCGACACGCCCCTGCCCCAGCGGGCCCGCAACTACATGGACCGCGAGCCGAGCCTGCCGCCGCCGATCT
ACCCGCCGGAGGAGGTGGCGAACGCCATCCTACACGCGGCCGTGCACCCGCAGCGCGACATCTTCGTGGGCGGCGCCGGC
AAGGCCTTCGTGGCCGGCAAGGAATTCGCCCCCGGCGCCTACGACTATCTCACCCCGGCGATCATCGCCCTGCAGAAGCG
CGGGAGCGCGCCGCGCAACCCGGACGGCGCGCTGCACGCGCCGGTCGCGGCGGGGGAGACGCGGGGCGACCCGCCCGTCC
CGGTCATGCGGACCAGCGCCTATACCCGCGCGACCCTGCACCCCCTCGCGGCCGCGGCCGGTCTGCTGGGCGTCGGCGCG
GCCACGGCCTTCGCGGTGCTCGGCACCTCGTCCGGACGCCGACGGCGCCTGTAG

Upstream 100 bases:

>100_bases
CGATCACCCGCGGGTGCGCCCGGAACATGCGGCCGCCCCGATCGATAGCCTAGCGTGTGGCCGCTCCCGTGCGGCCGCGC
CGCAGCGTCGGGGATATCGC

Downstream 100 bases:

>100_bases
GGGGAGGCGCGATGGAGACCCTGCCCGGCCCCGCCCGGCCGGCACGGGAGGCCGGGAGCGGGACCGGCGCCGAGGCCGAT
CCCCGGATCGTGCCGCGCCG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MKHKPLREQVIVITGASSGIGLATARMAAERGARVVLAARSGDALARIRAEIEGVGGKAIDVVADVGRRADVQAVADRAE
ATFGGFDTWVNVAGGSIYGRLREISDADHERLIQTNFWGTVYGSLVATEHLRQHGGALINVGSIASDLAFPFQGMYAASK
HAVKGFTDALRMELMDENAPISVTLIKPASIDTPLPQRARNYMDREPSLPPPIYPPEEVANAILHAAVHPQRDIFVGGAG
KAFVAGKEFAPGAYDYLTPAIIALQKRGSAPRNPDGALHAPVAAGETRGDPPVPVMRTSAYTRATLHPLAAAAGLLGVGA
ATAFAVLGTSSGRRRRL

Sequences:

>Translated_337_residues
MKHKPLREQVIVITGASSGIGLATARMAAERGARVVLAARSGDALARIRAEIEGVGGKAIDVVADVGRRADVQAVADRAE
ATFGGFDTWVNVAGGSIYGRLREISDADHERLIQTNFWGTVYGSLVATEHLRQHGGALINVGSIASDLAFPFQGMYAASK
HAVKGFTDALRMELMDENAPISVTLIKPASIDTPLPQRARNYMDREPSLPPPIYPPEEVANAILHAAVHPQRDIFVGGAG
KAFVAGKEFAPGAYDYLTPAIIALQKRGSAPRNPDGALHAPVAAGETRGDPPVPVMRTSAYTRATLHPLAAAAGLLGVGA
ATAFAVLGTSSGRRRRL
>Mature_337_residues
MKHKPLREQVIVITGASSGIGLATARMAAERGARVVLAARSGDALARIRAEIEGVGGKAIDVVADVGRRADVQAVADRAE
ATFGGFDTWVNVAGGSIYGRLREISDADHERLIQTNFWGTVYGSLVATEHLRQHGGALINVGSIASDLAFPFQGMYAASK
HAVKGFTDALRMELMDENAPISVTLIKPASIDTPLPQRARNYMDREPSLPPPIYPPEEVANAILHAAVHPQRDIFVGGAG
KAFVAGKEFAPGAYDYLTPAIIALQKRGSAPRNPDGALHAPVAAGETRGDPPVPVMRTSAYTRATLHPLAAAAGLLGVGA
ATAFAVLGTSSGRRRRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4503817, Length=240, Percent_Identity=32.0833333333333, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI20149619, Length=264, Percent_Identity=29.9242424242424, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI142976729, Length=242, Percent_Identity=28.099173553719, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI109715829, Length=237, Percent_Identity=26.5822784810127, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI32455239, Length=202, Percent_Identity=30.1980198019802, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI5031765, Length=202, Percent_Identity=30.1980198019802, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40254992, Length=191, Percent_Identity=29.8429319371728, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI7706318, Length=174, Percent_Identity=32.183908045977, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI157739938, Length=184, Percent_Identity=28.804347826087, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI32483357, Length=207, Percent_Identity=28.5024154589372, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI33667109, Length=200, Percent_Identity=31, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI5031737, Length=197, Percent_Identity=30.9644670050761, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4758504, Length=241, Percent_Identity=30.2904564315353, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI25282469, Length=258, Percent_Identity=31.0077519379845, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI19923817, Length=174, Percent_Identity=25.8620689655172, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI31543615, Length=236, Percent_Identity=28.3898305084746, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI83715985, Length=235, Percent_Identity=29.3617021276596, Blast_Score=66, Evalue=5e-11,
Organism=Escherichia coli, GI1786701, Length=229, Percent_Identity=31.8777292576419, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082100, Length=205, Percent_Identity=32.1951219512195, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787335, Length=220, Percent_Identity=28.6363636363636, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788459, Length=207, Percent_Identity=27.0531400966184, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789208, Length=232, Percent_Identity=29.3103448275862, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=194, Percent_Identity=29.3814432989691, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=235, Percent_Identity=31.4893617021277, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17564282, Length=226, Percent_Identity=27.4336283185841, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=241, Percent_Identity=26.9709543568465, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI32563809, Length=211, Percent_Identity=27.9620853080569, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=228, Percent_Identity=26.7543859649123, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17507613, Length=206, Percent_Identity=28.6407766990291, Blast_Score=71, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=235, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=168, Percent_Identity=30.3571428571429, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=223, Percent_Identity=26.457399103139, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=199, Percent_Identity=31.1557788944724, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=213, Percent_Identity=26.7605633802817, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=242, Percent_Identity=28.099173553719, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=235, Percent_Identity=28.0851063829787, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=195, Percent_Identity=31.7948717948718, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=199, Percent_Identity=28.1407035175879, Blast_Score=65, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=226, Percent_Identity=28.3185840707965, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=251, Percent_Identity=27.8884462151394, Blast_Score=64, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=239, Percent_Identity=26.7782426778243, Blast_Score=64, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=253, Percent_Identity=26.8774703557312, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=246, Percent_Identity=29.6747967479675, Blast_Score=82, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6322067, Length=181, Percent_Identity=26.5193370165746, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007236, Length=232, Percent_Identity=33.1896551724138, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24644339, Length=199, Percent_Identity=32.6633165829146, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21357041, Length=196, Percent_Identity=32.1428571428571, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28571526, Length=204, Percent_Identity=32.3529411764706, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI116007238, Length=186, Percent_Identity=33.8709677419355, Blast_Score=85, Evalue=8e-17,
Organism=Drosophila melanogaster, GI28571387, Length=234, Percent_Identity=30.3418803418803, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21356301, Length=230, Percent_Identity=28.695652173913, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21358495, Length=265, Percent_Identity=25.2830188679245, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24641388, Length=241, Percent_Identity=30.7053941908714, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI23397609, Length=169, Percent_Identity=33.7278106508876, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI17737361, Length=238, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24641232, Length=235, Percent_Identity=28.5106382978723, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281364494, Length=235, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24639444, Length=240, Percent_Identity=30.4166666666667, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007234, Length=229, Percent_Identity=28.3842794759825, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35418; Mature: 35418

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHKPLREQVIVITGASSGIGLATARMAAERGARVVLAARSGDALARIRAEIEGVGGKAI
CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCHH
DVVADVGRRADVQAVADRAEATFGGFDTWVNVAGGSIYGRLREISDADHERLIQTNFWGT
HHHHHCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCHH
VYGSLVATEHLRQHGGALINVGSIASDLAFPFQGMYAASKHAVKGFTDALRMELMDENAP
HHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
ISVTLIKPASIDTPLPQRARNYMDREPSLPPPIYPPEEVANAILHAAVHPQRDIFVGGAG
EEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCC
KAFVAGKEFAPGAYDYLTPAIIALQKRGSAPRNPDGALHAPVAAGETRGDPPVPVMRTSA
CEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCEEECCC
YTRATLHPLAAAAGLLGVGAATAFAVLGTSSGRRRRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKHKPLREQVIVITGASSGIGLATARMAAERGARVVLAARSGDALARIRAEIEGVGGKAI
CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCHH
DVVADVGRRADVQAVADRAEATFGGFDTWVNVAGGSIYGRLREISDADHERLIQTNFWGT
HHHHHCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCHH
VYGSLVATEHLRQHGGALINVGSIASDLAFPFQGMYAASKHAVKGFTDALRMELMDENAP
HHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
ISVTLIKPASIDTPLPQRARNYMDREPSLPPPIYPPEEVANAILHAAVHPQRDIFVGGAG
EEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCC
KAFVAGKEFAPGAYDYLTPAIIALQKRGSAPRNPDGALHAPVAAGETRGDPPVPVMRTSA
CEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCEEECCC
YTRATLHPLAAAAGLLGVGAATAFAVLGTSSGRRRRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]