| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is ifcA [H]
Identifier: 170751473
GI number: 170751473
Start: 5412737
End: 5414233
Strand: Direct
Name: ifcA [H]
Synonym: Mrad2831_5093
Alternate gene names: 170751473
Gene position: 5412737-5414233 (Clockwise)
Preceding gene: 170751471
Following gene: 170751474
Centisome position: 89.06
GC content: 71.01
Gene sequence:
>1497_bases ATGCAGCGTCCGGACGATGCGCGGTGGGATGTGGTCGTGGTCGGGTCGGGCAATGCCGCCATGAGTGCCGGTCTCGCCGC CCTGGAGCGCGGCGCCTCGGTGCTGATGATCGAGAAGGCCGAGCGGGACCTCGCCGGCGGCAACACCGCCTACACGGCCG GCGCCATGCGCTTCGTCTACGCGGGCAACGACGACCTGATTCCGCTGCTGGTCGATCCCGAGGATCCGCGCCTGCCGCGG ACCGATTTCGGCGCCTACACGGCGCAGAAGTTCGAGGAGGACCTGCTCGGCTTCAACGACGGGCGGCCGCTCTCGCGCGA GCAGCGCATCCTGATCGACGAGAGCGGCGCGGCTCTGCGCTGGCTCGCCACGCAGGGGGTGAAGTTCGAGCCGATCTATT CCCGCCAATCCTTCGAGAAGGACGGGCGCTTCGTGTTCTGGGGCGGCCTGACGCTCGCCACGCACGACGAGGGCTTCGGG CTCGCACGGGCCGAGCTGCAGGCCTTCACGAGGGCCGGCGGCGAGATCCGCTACGGCTGCCCGGCCCGGGGTCTGATCGT GGAGGACGGGCGCGTCGTCGGCGTGGAGACGCCGCAGGGGCCGGTCCGGGCGGCGTCCGTGGTGCTGGCCTGCGGCGGCT TCGAGTCGAACGCCGCCCTCCGCACGCGCTTCATCGGCGCGGGCTGGGACAGGGCGCGGGTGCGCGGCACGCCCCACAAC CAGGGCGACGGGCTCCAGATGGCCCTGGACCTCGGCGCGAAGGCCCACGGCTTCTACGGCGGCTGCCACGCCACGCCGAT GGACCTGCACACCCCCGATTACGGCAACCTCGACCTGCCGCACGGCGAGCGCAAGCACTACCGGAAGATCTGCTACTTCC TGGGTCTGATGCTGAACGCGAACGGCGAGCGCTTCGTCGACGAGGGCAAGAATTTCCGCAATTACACCTACGCCCAGTTC GGCCGCTCGATCATGGAGCAGCCCGGGCACGTGGCGTGGCAGATCTTCGACGCCAAGGTCGATCACCTGCTCTACAGCGA GTACCGGTTCCACGACGCGCACTACGTCGAGGCCGACACGCTGGACGGGCTCCTCGAGCGGCTCGAGGGCATCGACCGGG CGGCGGCGCGGCGGACCATCGCGGCGTTCAACGCCGCCGTGGACGAGAGCGTGCCGTTCGATCCGACCGTGAAGGACGGG CGCGGCACACGGGGGCTCGCCCTGCCGAAGTCGAACTGGGCGCAGAAGATCGAGACCGGGCCGTTCAAGGCCTACCCGGT CACGGGCGGCATCACCTTCACCTACGGCGGCGTCGAGGTCGGCGACGACGGCGGCGTGGAGCGCGCGGACGGCGGCGCGA TTCCCGGCCTCTACGCCTGCGGCGAGATGGTCGGCGGCGTCTTCTTCAACGGCTATCCCGGCGGTTCGGGGCTGACCTCC GGCGTCGTGTTCGGCCGCCGCGCCGGCTACGGCGCCGCCGCGAGGGCGAAGGGCTGA
Upstream 100 bases:
>100_bases GCTCGGCCATAGCGCGAAACCGAGGGGGCCGAAACGCTTGCCGCCAATTGCATGCAGTCGTATACAATGAGGCGAGAGAG GCCGGTGAGAGGAGGCAGGG
Downstream 100 bases:
>100_bases GGTCCGCGGCGGAACGCGCCCGGATCCCTGACCTTCGCGGGGGTGGGGGGAGCCGCGCGATCGTTTCCCCAGCGGCCCAT CGCCCCCTGTCCGCGAGCCC
Product: tricarballylate dehydrogenase
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 498; Mature: 498
Protein sequence:
>498_residues MQRPDDARWDVVVVGSGNAAMSAGLAALERGASVLMIEKAERDLAGGNTAYTAGAMRFVYAGNDDLIPLLVDPEDPRLPR TDFGAYTAQKFEEDLLGFNDGRPLSREQRILIDESGAALRWLATQGVKFEPIYSRQSFEKDGRFVFWGGLTLATHDEGFG LARAELQAFTRAGGEIRYGCPARGLIVEDGRVVGVETPQGPVRAASVVLACGGFESNAALRTRFIGAGWDRARVRGTPHN QGDGLQMALDLGAKAHGFYGGCHATPMDLHTPDYGNLDLPHGERKHYRKICYFLGLMLNANGERFVDEGKNFRNYTYAQF GRSIMEQPGHVAWQIFDAKVDHLLYSEYRFHDAHYVEADTLDGLLERLEGIDRAAARRTIAAFNAAVDESVPFDPTVKDG RGTRGLALPKSNWAQKIETGPFKAYPVTGGITFTYGGVEVGDDGGVERADGGAIPGLYACGEMVGGVFFNGYPGGSGLTS GVVFGRRAGYGAAARAKG
Sequences:
>Translated_498_residues MQRPDDARWDVVVVGSGNAAMSAGLAALERGASVLMIEKAERDLAGGNTAYTAGAMRFVYAGNDDLIPLLVDPEDPRLPR TDFGAYTAQKFEEDLLGFNDGRPLSREQRILIDESGAALRWLATQGVKFEPIYSRQSFEKDGRFVFWGGLTLATHDEGFG LARAELQAFTRAGGEIRYGCPARGLIVEDGRVVGVETPQGPVRAASVVLACGGFESNAALRTRFIGAGWDRARVRGTPHN QGDGLQMALDLGAKAHGFYGGCHATPMDLHTPDYGNLDLPHGERKHYRKICYFLGLMLNANGERFVDEGKNFRNYTYAQF GRSIMEQPGHVAWQIFDAKVDHLLYSEYRFHDAHYVEADTLDGLLERLEGIDRAAARRTIAAFNAAVDESVPFDPTVKDG RGTRGLALPKSNWAQKIETGPFKAYPVTGGITFTYGGVEVGDDGGVERADGGAIPGLYACGEMVGGVFFNGYPGGSGLTS GVVFGRRAGYGAAARAKG >Mature_498_residues MQRPDDARWDVVVVGSGNAAMSAGLAALERGASVLMIEKAERDLAGGNTAYTAGAMRFVYAGNDDLIPLLVDPEDPRLPR TDFGAYTAQKFEEDLLGFNDGRPLSREQRILIDESGAALRWLATQGVKFEPIYSRQSFEKDGRFVFWGGLTLATHDEGFG LARAELQAFTRAGGEIRYGCPARGLIVEDGRVVGVETPQGPVRAASVVLACGGFESNAALRTRFIGAGWDRARVRGTPHN QGDGLQMALDLGAKAHGFYGGCHATPMDLHTPDYGNLDLPHGERKHYRKICYFLGLMLNANGERFVDEGKNFRNYTYAQF GRSIMEQPGHVAWQIFDAKVDHLLYSEYRFHDAHYVEADTLDGLLERLEGIDRAAARRTIAAFNAAVDESVPFDPTVKDG RGTRGLALPKSNWAQKIETGPFKAYPVTGGITFTYGGVEVGDDGGVERADGGAIPGLYACGEMVGGVFFNGYPGGSGLTS GVVFGRRAGYGAAARAKG
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 53752; Mature: 53752
Theoretical pI: Translated: 5.99; Mature: 5.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRPDDARWDVVVVGSGNAAMSAGLAALERGASVLMIEKAERDLAGGNTAYTAGAMRFVY CCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEECCCEEEEE AGNDDLIPLLVDPEDPRLPRTDFGAYTAQKFEEDLLGFNDGRPLSREQRILIDESGAALR ECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEE WLATQGVKFEPIYSRQSFEKDGRFVFWGGLTLATHDEGFGLARAELQAFTRAGGEIRYGC EEECCCCEECEECCCCCCCCCCCEEEECCEEEEECCCCCCHHHHHHHHHHHCCCEEEECC PARGLIVEDGRVVGVETPQGPVRAASVVLACGGFESNAALRTRFIGAGWDRARVRGTPHN CCCCEEEECCEEEEEECCCCCHHEEEEEEEECCCCCCCEEEEEEEECCCCCCEECCCCCC QGDGLQMALDLGAKAHGFYGGCHATPMDLHTPDYGNLDLPHGERKHYRKICYFLGLMLNA CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC NGERFVDEGKNFRNYTYAQFGRSIMEQPGHVAWQIFDAKVDHLLYSEYRFHDAHYVEADT CCCHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHEECCCEEECHHH LDGLLERLEGIDRAAARRTIAAFNAAVDESVPFDPTVKDGRGTRGLALPKSNWAQKIETG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC PFKAYPVTGGITFTYGGVEVGDDGGVERADGGAIPGLYACGEMVGGVFFNGYPGGSGLTS CEEEEEECCCEEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCH GVVFGRRAGYGAAARAKG HHEECCCCCCCCCCCCCC >Mature Secondary Structure MQRPDDARWDVVVVGSGNAAMSAGLAALERGASVLMIEKAERDLAGGNTAYTAGAMRFVY CCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEECCCEEEEE AGNDDLIPLLVDPEDPRLPRTDFGAYTAQKFEEDLLGFNDGRPLSREQRILIDESGAALR ECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEE WLATQGVKFEPIYSRQSFEKDGRFVFWGGLTLATHDEGFGLARAELQAFTRAGGEIRYGC EEECCCCEECEECCCCCCCCCCCEEEECCEEEEECCCCCCHHHHHHHHHHHCCCEEEECC PARGLIVEDGRVVGVETPQGPVRAASVVLACGGFESNAALRTRFIGAGWDRARVRGTPHN CCCCEEEECCEEEEEECCCCCHHEEEEEEEECCCCCCCEEEEEEEECCCCCCEECCCCCC QGDGLQMALDLGAKAHGFYGGCHATPMDLHTPDYGNLDLPHGERKHYRKICYFLGLMLNA CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC NGERFVDEGKNFRNYTYAQFGRSIMEQPGHVAWQIFDAKVDHLLYSEYRFHDAHYVEADT CCCHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHEECCCEEECHHH LDGLLERLEGIDRAAARRTIAAFNAAVDESVPFDPTVKDGRGTRGLALPKSNWAQKIETG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC PFKAYPVTGGITFTYGGVEVGDDGGVERADGGAIPGLYACGEMVGGVFFNGYPGGSGLTS CEEEEEECCCEEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCH GVVFGRRAGYGAAARAKG HHEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]