Click here to switch to the map view.

The map label for this gene is carC [H]

Identifier: 170751419

GI number: 170751419

Start: 5351427

End: 5353016

Strand: Reverse

Name: carC [H]

Synonym: Mrad2831_5038

Alternate gene names: 170751419

Gene position: 5353016-5351427 (Counterclockwise)

Preceding gene: 170751420

Following gene: 170751418

Centisome position: 88.07

GC content: 69.12

Gene sequence:

>1590_bases
TTGCTTCAGTCTGGGGACGGGTTGCGGGCGCTGACCGGACGCCGGGTGGCCGTGGTCGGGGCTGGGCCGGGCGGACTGGC
CGCCGCCCTGCTGCTCGCGCGGGCCGGGATCCACGTCACCATCTTCGAGAAGGACCCGCAGGTCGGGGGTCGGACGAAGA
CCGTCGAGGCGCCCGGCGGCTACCGGTTCGATATCGGCCCGACCTTCTTCCTCTATCCACAGATTCTCGCGGACATCTTC
GCGAGCTGCGGCGAGCGGCTGGAGGAGCACGTCAAGCTCGAGCGGCTCGACCCGCAGTACCACCTCGTGTTCGAGGGCGC
GGAGGGCATCACGGGGACGATCAGCGCCACCGGTGACGTCGAGCGCCTGGAGCGCGAGATCGCCCGCCTCGCGCCGGACG
ACGCCAAGAACGTCAAAGACTTCTTCGCCGAGAACCGGACCAAGCTGAACTACTTCAAGCCGGTCCTCGAGCAAGCCTTC
CACACCCTGCGCAGCATGGCGAGTCCGGCCATGCTGGCCGCCCTGCCCTACCTGCATCCGGGTCGGAGCGTCGACCGCGA
CCTGAAGCGACACTTCGCCGACCCGCGGGTGCGGCTCGCCTTCTCGTTCCAGACCAAATACCTCGGGATGTCGCCGTTCC
GGTGCCCGAGCCTGTTCACCATCCTGTCGTTCCTCGAATACGAGCACGGCGTCTACCACCCGGTGGGCGGCTGCGGCGCC
GTCTCCGAGGCGATGGCGGGCCTGGCCGGCCGCATGGGCGTCGATCTCCGGCTCAACAGCAACGTCGAGGAAGTGCTGTT
CGACGGCAAGCGCGCCAGCGGTCTCGTGGCGGACGGTGAGACCTTCAACGCCGACGCGGTGCTGATCAACGGCGACTTCG
CGAAGGTCGTCCGCGCCCTCGTCCCGGAGCGGCACCGGCCGCGCTGGCGCAATGCCAAGATCCGGAAGGCCCGGCTCTCC
TGCTCGACCTTCATGCTGTATCTCGGCCTCGAGGGGAAAATGCCCGACAGCCTCGGGCACCACACGATCCTCCTGGCCGA
CGGCTACGAGAAGAACATCCGCGAGATCACCGAGGGCACGCTGCCGATGCAGCCGTCCCTGTACGTGCAGCACGCGGGCT
ACACCGATGGCGGCATGGCGCCGCCCGGACACACGGCCCTCTACGTGCTGGTGCCGGTGCCCAACCTGAAGGCGGGGATC
GACTGGGCGGCGATGCGCGAGACCTACCGCGCCCTGATCCTGGACCGGCTGAAGCTCCTCGGGATCGACGATCTCGAGTC
CCGCATCCGCTACGAGCGGATCATCGACCCGACCCAGTGGGAAGAGGATTTCGCCGTCCACGAGGGCGCCACCTTCAACC
TCGCCCACGACCTCCTGCAGATGCTGTATTTCCGGCCGCACAACCGCTTCGGACCGGGCCTCTACATCGTCGGCGGCGGC
ACCCATCCGGGCTCCGGCCTGCCGGTGATCTACGAGGGCGCCCGCATCTCCGCCCGGCTGCTGATCGAGGAACTGGCGGG
CGCCCGCGCCGCCGCCGCGGCCGGCATCCCCGATACCGCCCCGCTGGCGACCTCCGGCGAGGCCTCGTGA

Upstream 100 bases:

>100_bases
ACAGCGTTCTGCGCGCGACAAACGGCTGCAATTGCCGCCCGATGATGCGAAGCTAGCTTGGCCGCATGGGGTATCGGGAT
TCTGTGAGGAGTCGAGGACG

Downstream 100 bases:

>100_bases
GCGCCGCGTCCGGCCGGAGGTATCTCCGGAGGCTGGCAGGCCGCGCGACGGTTGCCTCCGCGGTCTGGCTCAGCGCCGCG
ACCGTGCCGGCCTGGGCCGC

Product: phytoene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MLQSGDGLRALTGRRVAVVGAGPGGLAAALLLARAGIHVTIFEKDPQVGGRTKTVEAPGGYRFDIGPTFFLYPQILADIF
ASCGERLEEHVKLERLDPQYHLVFEGAEGITGTISATGDVERLEREIARLAPDDAKNVKDFFAENRTKLNYFKPVLEQAF
HTLRSMASPAMLAALPYLHPGRSVDRDLKRHFADPRVRLAFSFQTKYLGMSPFRCPSLFTILSFLEYEHGVYHPVGGCGA
VSEAMAGLAGRMGVDLRLNSNVEEVLFDGKRASGLVADGETFNADAVLINGDFAKVVRALVPERHRPRWRNAKIRKARLS
CSTFMLYLGLEGKMPDSLGHHTILLADGYEKNIREITEGTLPMQPSLYVQHAGYTDGGMAPPGHTALYVLVPVPNLKAGI
DWAAMRETYRALILDRLKLLGIDDLESRIRYERIIDPTQWEEDFAVHEGATFNLAHDLLQMLYFRPHNRFGPGLYIVGGG
THPGSGLPVIYEGARISARLLIEELAGARAAAAAGIPDTAPLATSGEAS

Sequences:

>Translated_529_residues
MLQSGDGLRALTGRRVAVVGAGPGGLAAALLLARAGIHVTIFEKDPQVGGRTKTVEAPGGYRFDIGPTFFLYPQILADIF
ASCGERLEEHVKLERLDPQYHLVFEGAEGITGTISATGDVERLEREIARLAPDDAKNVKDFFAENRTKLNYFKPVLEQAF
HTLRSMASPAMLAALPYLHPGRSVDRDLKRHFADPRVRLAFSFQTKYLGMSPFRCPSLFTILSFLEYEHGVYHPVGGCGA
VSEAMAGLAGRMGVDLRLNSNVEEVLFDGKRASGLVADGETFNADAVLINGDFAKVVRALVPERHRPRWRNAKIRKARLS
CSTFMLYLGLEGKMPDSLGHHTILLADGYEKNIREITEGTLPMQPSLYVQHAGYTDGGMAPPGHTALYVLVPVPNLKAGI
DWAAMRETYRALILDRLKLLGIDDLESRIRYERIIDPTQWEEDFAVHEGATFNLAHDLLQMLYFRPHNRFGPGLYIVGGG
THPGSGLPVIYEGARISARLLIEELAGARAAAAAGIPDTAPLATSGEAS
>Mature_529_residues
MLQSGDGLRALTGRRVAVVGAGPGGLAAALLLARAGIHVTIFEKDPQVGGRTKTVEAPGGYRFDIGPTFFLYPQILADIF
ASCGERLEEHVKLERLDPQYHLVFEGAEGITGTISATGDVERLEREIARLAPDDAKNVKDFFAENRTKLNYFKPVLEQAF
HTLRSMASPAMLAALPYLHPGRSVDRDLKRHFADPRVRLAFSFQTKYLGMSPFRCPSLFTILSFLEYEHGVYHPVGGCGA
VSEAMAGLAGRMGVDLRLNSNVEEVLFDGKRASGLVADGETFNADAVLINGDFAKVVRALVPERHRPRWRNAKIRKARLS
CSTFMLYLGLEGKMPDSLGHHTILLADGYEKNIREITEGTLPMQPSLYVQHAGYTDGGMAPPGHTALYVLVPVPNLKAGI
DWAAMRETYRALILDRLKLLGIDDLESRIRYERIIDPTQWEEDFAVHEGATFNLAHDLLQMLYFRPHNRFGPGLYIVGGG
THPGSGLPVIYEGARISARLLIEELAGARAAAAAGIPDTAPLATSGEAS

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.14.99.-

Molecular weight: Translated: 57857; Mature: 57857

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS00982 PHYTOENE_DH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQSGDGLRALTGRRVAVVGAGPGGLAAALLLARAGIHVTIFEKDPQVGGRTKTVEAPGG
CCCCCCCCEEECCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCC
YRFDIGPTFFLYPQILADIFASCGERLEEHVKLERLDPQYHLVFEGAEGITGTISATGDV
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCH
ERLEREIARLAPDDAKNVKDFFAENRTKLNYFKPVLEQAFHTLRSMASPAMLAALPYLHP
HHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
GRSVDRDLKRHFADPRVRLAFSFQTKYLGMSPFRCPSLFTILSFLEYEHGVYHPVGGCGA
CCCHHHHHHHHCCCCCEEEEEEEEEHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHH
VSEAMAGLAGRMGVDLRLNSNVEEVLFDGKRASGLVADGETFNADAVLINGDFAKVVRAL
HHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCCCEEECCCCCCCCEEEECCCHHHHHHHH
VPERHRPRWRNAKIRKARLSCSTFMLYLGLEGKMPDSLGHHTILLADGYEKNIREITEGT
CCCCCCCCCCCCCHHHHHHHHHEEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHCCC
LPMQPSLYVQHAGYTDGGMAPPGHTALYVLVPVPNLKAGIDWAAMRETYRALILDRLKLL
CCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
GIDDLESRIRYERIIDPTQWEEDFAVHEGATFNLAHDLLQMLYFRPHNRFGPGLYIVGGG
CCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECC
THPGSGLPVIYEGARISARLLIEELAGARAAAAAGIPDTAPLATSGEAS
CCCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLQSGDGLRALTGRRVAVVGAGPGGLAAALLLARAGIHVTIFEKDPQVGGRTKTVEAPGG
CCCCCCCCEEECCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCC
YRFDIGPTFFLYPQILADIFASCGERLEEHVKLERLDPQYHLVFEGAEGITGTISATGDV
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCH
ERLEREIARLAPDDAKNVKDFFAENRTKLNYFKPVLEQAFHTLRSMASPAMLAALPYLHP
HHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
GRSVDRDLKRHFADPRVRLAFSFQTKYLGMSPFRCPSLFTILSFLEYEHGVYHPVGGCGA
CCCHHHHHHHHCCCCCEEEEEEEEEHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHH
VSEAMAGLAGRMGVDLRLNSNVEEVLFDGKRASGLVADGETFNADAVLINGDFAKVVRAL
HHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCCCEEECCCCCCCCEEEECCCHHHHHHHH
VPERHRPRWRNAKIRKARLSCSTFMLYLGLEGKMPDSLGHHTILLADGYEKNIREITEGT
CCCCCCCCCCCCCHHHHHHHHHEEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHCCC
LPMQPSLYVQHAGYTDGGMAPPGHTALYVLVPVPNLKAGIDWAAMRETYRALILDRLKLL
CCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
GIDDLESRIRYERIIDPTQWEEDFAVHEGATFNLAHDLLQMLYFRPHNRFGPGLYIVGGG
CCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECC
THPGSGLPVIYEGARISARLLIEELAGARAAAAAGIPDTAPLATSGEAS
CCCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8467787 [H]