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The map label for this gene is yfkH [H]

Identifier: 170748550

GI number: 170748550

Start: 2272460

End: 2273587

Strand: Reverse

Name: yfkH [H]

Synonym: Mrad2831_2132

Alternate gene names: 170748550

Gene position: 2273587-2272460 (Counterclockwise)

Preceding gene: 170748554

Following gene: 170748549

Centisome position: 37.41

GC content: 71.01

Gene sequence:

>1128_bases
ATGCTCGGCTCGGCGCTGGTCGCCCTCGCGGCGGCGCCGGCGCGGCGCGGCGTGCCCGCGGTTCTTCCCGCCGACGAGCC
GCCGGCCGACCGCGACCCGCCCTGCAACGACGCGGGCCTGCGGAAGGGCGTGGCCGCGGGCGCGCGCTCGATCTCCGGGC
GCGCCGCGCAGCTCACCGCCGCGACCCAGCCCGAGCGCGGTCGCGCCGCCGACAGCCCCGCCGAGATGACGCGGTCCGGC
TGGAAGGACATCGCCGTCCGGGTCTACCTGGAATTCAACAAGGACCGGGTCCTGGCGGTCGCCGCCGGCGTGACCTTCTA
CACGCTGCTGTCGCTGTTCCCCGCCATCGCCGCGCTGGTCTCCTGCTACGGCCTGTTCGCCGACGTGACCGTCATCAACG
ATCACCTCGCCCAGCTGCACGCGGTCCTGCCGTCCGGCGCGGTCGAACTCATCGGCGACCAGGTCAAGCGCATCGCCGCC
AAGGGCAGCGGCTCCCTCAGCATCACGTTCTTCTCCAGCCTGCTCCTGTCGATCTGGAGCGCCAACGCGGCCATGAAGGC
GATGTTCGACGCGCTGAACGTCGTCTACGAGGAGGAGGAGAAGCGGAACTTCTTCTGGCTCAACCTCCGGTCGCTCACCT
TCACGGTCGGCGCCCTGCTGTTCATCATCGTCGCGCTCAACGTGATCGTGGTCGTGCCGGTGGTGCTGAACTTCCTGGGG
CTCGGCTCGACCGCGTGGCTGCTCGCGGCCCTGCGCTGGCCGGCGATCCTGATCGTCCTCCTCGGCGGCCTGTCGGTGCT
CTACCGGTTCGGGCCGAGCCGGGAACATGCCCGCTGGCGCTGGGTCGGGGTCGGCAGCGTCGTCGCGGGCCTGCTCTGGC
TCGCCGCCTCGCTCCTGTTTTCCTGGTACGTCGCCAATTTCGGCACCTACAATGAGACCTACGGCTCGCTGGGGGCCGTG
ATCGGCTTCATGACGTGGATCTGGATCTCGTCGACGATCGTGCTGCTCGGGGGCGAGATCAACGCCGAGCTGGAGCACCA
GACCGCCCGCGACACCACAACGGGCGCGCCGCTGCCGATGGGCGCGCGCCGGGCGCGGATGGCCGACACCGTCGGCGCCG
CCGCCTGA

Upstream 100 bases:

>100_bases
TCCCGAGCGCGGCAGTTCCGCGCACTGGCTCCGACCCATGCCCCCGTCACCGTCGCGTTCGACCGCCTCCTCCGAGACCG
GCTCGATCCTCTGGATCCTG

Downstream 100 bases:

>100_bases
ACGCGGCGTCTCCGGTCCCCGGGACGCCTGCGGCATCCTCCGGGACTGCCGGAGACGGCGCGCGTTCCCTATATAGCGTG
GCGAAAAGGGAGATCGCCAT

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MLGSALVALAAAPARRGVPAVLPADEPPADRDPPCNDAGLRKGVAAGARSISGRAAQLTAATQPERGRAADSPAEMTRSG
WKDIAVRVYLEFNKDRVLAVAAGVTFYTLLSLFPAIAALVSCYGLFADVTVINDHLAQLHAVLPSGAVELIGDQVKRIAA
KGSGSLSITFFSSLLLSIWSANAAMKAMFDALNVVYEEEEKRNFFWLNLRSLTFTVGALLFIIVALNVIVVVPVVLNFLG
LGSTAWLLAALRWPAILIVLLGGLSVLYRFGPSREHARWRWVGVGSVVAGLLWLAASLLFSWYVANFGTYNETYGSLGAV
IGFMTWIWISSTIVLLGGEINAELEHQTARDTTTGAPLPMGARRARMADTVGAAA

Sequences:

>Translated_375_residues
MLGSALVALAAAPARRGVPAVLPADEPPADRDPPCNDAGLRKGVAAGARSISGRAAQLTAATQPERGRAADSPAEMTRSG
WKDIAVRVYLEFNKDRVLAVAAGVTFYTLLSLFPAIAALVSCYGLFADVTVINDHLAQLHAVLPSGAVELIGDQVKRIAA
KGSGSLSITFFSSLLLSIWSANAAMKAMFDALNVVYEEEEKRNFFWLNLRSLTFTVGALLFIIVALNVIVVVPVVLNFLG
LGSTAWLLAALRWPAILIVLLGGLSVLYRFGPSREHARWRWVGVGSVVAGLLWLAASLLFSWYVANFGTYNETYGSLGAV
IGFMTWIWISSTIVLLGGEINAELEHQTARDTTTGAPLPMGARRARMADTVGAAA
>Mature_375_residues
MLGSALVALAAAPARRGVPAVLPADEPPADRDPPCNDAGLRKGVAAGARSISGRAAQLTAATQPERGRAADSPAEMTRSG
WKDIAVRVYLEFNKDRVLAVAAGVTFYTLLSLFPAIAALVSCYGLFADVTVINDHLAQLHAVLPSGAVELIGDQVKRIAA
KGSGSLSITFFSSLLLSIWSANAAMKAMFDALNVVYEEEEKRNFFWLNLRSLTFTVGALLFIIVALNVIVVVPVVLNFLG
LGSTAWLLAALRWPAILIVLLGGLSVLYRFGPSREHARWRWVGVGSVVAGLLWLAASLLFSWYVANFGTYNETYGSLGAV
IGFMTWIWISSTIVLLGGEINAELEHQTARDTTTGAPLPMGARRARMADTVGAAA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 39926; Mature: 39926

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGSALVALAAAPARRGVPAVLPADEPPADRDPPCNDAGLRKGVAAGARSISGRAAQLTA
CCCHHHHHHHHCHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
ATQPERGRAADSPAEMTRSGWKDIAVRVYLEFNKDRVLAVAAGVTFYTLLSLFPAIAALV
CCCCCCCCCCCCHHHHHHCCCHHEEEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHH
SCYGLFADVTVINDHLAQLHAVLPSGAVELIGDQVKRIAAKGSGSLSITFFSSLLLSIWS
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHC
ANAAMKAMFDALNVVYEEEEKRNFFWLNLRSLTFTVGALLFIIVALNVIVVVPVVLNFLG
CHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGSTAWLLAALRWPAILIVLLGGLSVLYRFGPSREHARWRWVGVGSVVAGLLWLAASLLF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
SWYVANFGTYNETYGSLGAVIGFMTWIWISSTIVLLGGEINAELEHQTARDTTTGAPLPM
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHCCCCCCCCCCCC
GARRARMADTVGAAA
CHHHHHHHHHHCCCC
>Mature Secondary Structure
MLGSALVALAAAPARRGVPAVLPADEPPADRDPPCNDAGLRKGVAAGARSISGRAAQLTA
CCCHHHHHHHHCHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
ATQPERGRAADSPAEMTRSGWKDIAVRVYLEFNKDRVLAVAAGVTFYTLLSLFPAIAALV
CCCCCCCCCCCCHHHHHHCCCHHEEEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHH
SCYGLFADVTVINDHLAQLHAVLPSGAVELIGDQVKRIAAKGSGSLSITFFSSLLLSIWS
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHC
ANAAMKAMFDALNVVYEEEEKRNFFWLNLRSLTFTVGALLFIIVALNVIVVVPVVLNFLG
CHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGSTAWLLAALRWPAILIVLLGGLSVLYRFGPSREHARWRWVGVGSVVAGLLWLAASLLF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
SWYVANFGTYNETYGSLGAVIGFMTWIWISSTIVLLGGEINAELEHQTARDTTTGAPLPM
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHCCCCCCCCCCCC
GARRARMADTVGAAA
CHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]