| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is yhdF [H]
Identifier: 170748417
GI number: 170748417
Start: 2127284
End: 2128159
Strand: Reverse
Name: yhdF [H]
Synonym: Mrad2831_1999
Alternate gene names: 170748417
Gene position: 2128159-2127284 (Counterclockwise)
Preceding gene: 170748422
Following gene: 170748415
Centisome position: 35.02
GC content: 69.41
Gene sequence:
>876_bases GTGACCACGGATCCGCTGCACAAATATCCCCGCCCGCCCTTCGCGGCGCAGCCCCAGAGCTTTCCCGGCAAGACCGGCCG CATGGAACCGGAACCCGACCACGGCGAGGCGAGCTACAAGGGCTCGGGCAAGCTGACCGGTCGAGCGGCGCTGATCACCG GCGGCGATTCCGGCATCGGCCGCGCGGTCGCCATCGCCTTCGCCCGCGAAGGGGCCGACATCGCCATCTCCTACCTGCCC GACGAGCAGGCCGACGCGGAGGCGGTCGCCCAGTGGGTCGAGAAGGCGGGACGGCGGGCGCTGCTCCTGCCGGGCGACCT CAAGGACGCCGCCTACGGGCGCCAGATCGTTGCCCGCACGGTGGAGACGTTCGGGCGCCTCGACGTGCTGGTCAACAACG GGGCGTTCCAGCAGCCGAACGAGGACCTCGCCGGGATCGACGACGCCGTGTTCGAGGACCATTTCCGCACCAACGTGTTC GGCGCGTTCTACGTGACCAAGGCGGCGCTCGCCCATCTGAAGCCCGGCGCCTCGGTGATCTTCACCTCGTCGGTGAACTC CAAGCACCCGATGCCGTCGCTCCTGGCCTACAGCGCCACCAAGGGCGCCCTGAGCAACATGGTGCTCAGCCTCTCCCAGC TGCTCGCCGACAAGGGCGTGCGCGTGAACGGCGTGCTGCCCGGGCCGATCTGGACGCCGTTCATCCCCTCCGGGATGAGC CAGGATTCGGTGAAATCCTTCGGCAGCCAGGTGCCGTTCGGCCGGCCCGGACAACCGGCCGAACTCGCCTCGGCTTACGT GATGCTGGCCTCTGAGGAGAGCAGCTACACGTCGGGCGCGCTCGTCACGGTGGCCGGGGCCATGCCGGTGTTCTGA
Upstream 100 bases:
>100_bases CCGTGCCGGGCAGGGCTGTGCCGGGCGGGGCGCGGCGCCAGGGCACTGGAACACCCGGGAGACCGTGCGGTTGGACCGGC ATCCCTATCGGAGACGACGC
Downstream 100 bases:
>100_bases CGCGCCCCTCCGGTGCGCTTCGCGGACGGGCCCCGCACCCGGGGGTGCCCGTCCGCGCGACGGCGCGCTCAGGCGGCGCG CATCTCGACGAGAAACCGCA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MTTDPLHKYPRPPFAAQPQSFPGKTGRMEPEPDHGEASYKGSGKLTGRAALITGGDSGIGRAVAIAFAREGADIAISYLP DEQADAEAVAQWVEKAGRRALLLPGDLKDAAYGRQIVARTVETFGRLDVLVNNGAFQQPNEDLAGIDDAVFEDHFRTNVF GAFYVTKAALAHLKPGASVIFTSSVNSKHPMPSLLAYSATKGALSNMVLSLSQLLADKGVRVNGVLPGPIWTPFIPSGMS QDSVKSFGSQVPFGRPGQPAELASAYVMLASEESSYTSGALVTVAGAMPVF
Sequences:
>Translated_291_residues MTTDPLHKYPRPPFAAQPQSFPGKTGRMEPEPDHGEASYKGSGKLTGRAALITGGDSGIGRAVAIAFAREGADIAISYLP DEQADAEAVAQWVEKAGRRALLLPGDLKDAAYGRQIVARTVETFGRLDVLVNNGAFQQPNEDLAGIDDAVFEDHFRTNVF GAFYVTKAALAHLKPGASVIFTSSVNSKHPMPSLLAYSATKGALSNMVLSLSQLLADKGVRVNGVLPGPIWTPFIPSGMS QDSVKSFGSQVPFGRPGQPAELASAYVMLASEESSYTSGALVTVAGAMPVF >Mature_290_residues TTDPLHKYPRPPFAAQPQSFPGKTGRMEPEPDHGEASYKGSGKLTGRAALITGGDSGIGRAVAIAFAREGADIAISYLPD EQADAEAVAQWVEKAGRRALLLPGDLKDAAYGRQIVARTVETFGRLDVLVNNGAFQQPNEDLAGIDDAVFEDHFRTNVFG AFYVTKAALAHLKPGASVIFTSSVNSKHPMPSLLAYSATKGALSNMVLSLSQLLADKGVRVNGVLPGPIWTPFIPSGMSQ DSVKSFGSQVPFGRPGQPAELASAYVMLASEESSYTSGALVTVAGAMPVF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=271, Percent_Identity=28.0442804428044, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=29.0322580645161, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=31.5789473684211, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI5031737, Length=247, Percent_Identity=29.9595141700405, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=29.0196078431373, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=29.4573643410853, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=29.4736842105263, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=30.9278350515464, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI7706318, Length=221, Percent_Identity=25.7918552036199, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=28.2258064516129, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=27.3809523809524, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=29.4820717131474, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI83715985, Length=258, Percent_Identity=27.906976744186, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=27.6422764227642, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1789378, Length=284, Percent_Identity=47.887323943662, Blast_Score=261, Evalue=5e-71, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=33.0708661417323, Blast_Score=115, Evalue=5e-27, Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=34, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=34.6938775510204, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1787905, Length=252, Percent_Identity=29.7619047619048, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=31.5573770491803, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=30.241935483871, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=30.1204819277108, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=28.3400809716599, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=27.710843373494, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=27.2373540856031, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787526, Length=242, Percent_Identity=26.4462809917355, Blast_Score=64, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=34.6613545816733, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=33.0769230769231, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=33.0769230769231, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=28.2868525896414, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=32.520325203252, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=32.183908045977, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=30.7692307692308, Blast_Score=104, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=30.5343511450382, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=31.1740890688259, Blast_Score=101, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17538480, Length=256, Percent_Identity=30.46875, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17551412, Length=249, Percent_Identity=30.9236947791165, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562904, Length=252, Percent_Identity=30.5555555555556, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=31.25, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=30.3030303030303, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=31.0344827586207, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17544670, Length=252, Percent_Identity=28.968253968254, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17563726, Length=248, Percent_Identity=28.6290322580645, Blast_Score=91, Evalue=1e-18, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=30.5220883534137, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=29.6992481203008, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=27.6264591439689, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=26.9662921348315, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=29.7709923664122, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=30.7086614173228, Blast_Score=81, Evalue=8e-16, Organism=Caenorhabditis elegans, GI71982365, Length=258, Percent_Identity=26.7441860465116, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=31.1284046692607, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=28.735632183908, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=26.8482490272374, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17565030, Length=274, Percent_Identity=28.1021897810219, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17564282, Length=197, Percent_Identity=31.4720812182741, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17568967, Length=193, Percent_Identity=25.9067357512953, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=27.5590551181102, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17561272, Length=261, Percent_Identity=29.1187739463602, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=23.5772357723577, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17558628, Length=205, Percent_Identity=29.2682926829268, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=24.8995983935743, Blast_Score=69, Evalue=9e-13, Organism=Saccharomyces cerevisiae, GI6322226, Length=210, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=7e-12, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=34.7826086956522, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=33.3333333333333, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=29.8387096774194, Blast_Score=104, Evalue=7e-23, Organism=Drosophila melanogaster, GI28571526, Length=239, Percent_Identity=32.2175732217573, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=31.4516129032258, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=31.6205533596838, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24644337, Length=254, Percent_Identity=35.0393700787402, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI24643142, Length=251, Percent_Identity=33.0677290836653, Blast_Score=88, Evalue=9e-18, Organism=Drosophila melanogaster, GI21357673, Length=201, Percent_Identity=29.8507462686567, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI21358495, Length=208, Percent_Identity=30.2884615384615, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=26.6409266409266, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24580925, Length=205, Percent_Identity=27.8048780487805, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI18859837, Length=221, Percent_Identity=27.6018099547511, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30639; Mature: 30508
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: PS00061 ADH_SHORT ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTDPLHKYPRPPFAAQPQSFPGKTGRMEPEPDHGEASYKGSGKLTGRAALITGGDSGIG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC RAVAIAFAREGADIAISYLPDEQADAEAVAQWVEKAGRRALLLPGDLKDAAYGRQIVART HHEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHH VETFGRLDVLVNNGAFQQPNEDLAGIDDAVFEDHFRTNVFGAFYVTKAALAHLKPGASVI HHHHHCEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE FTSSVNSKHPMPSLLAYSATKGALSNMVLSLSQLLADKGVRVNGVLPGPIWTPFIPSGMS EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC QDSVKSFGSQVPFGRPGQPAELASAYVMLASEESSYTSGALVTVAGAMPVF HHHHHHHHCCCCCCCCCCCHHHHHEEEEEECCCCCCCCCEEEEEECCCCCC >Mature Secondary Structure TTDPLHKYPRPPFAAQPQSFPGKTGRMEPEPDHGEASYKGSGKLTGRAALITGGDSGIG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC RAVAIAFAREGADIAISYLPDEQADAEAVAQWVEKAGRRALLLPGDLKDAAYGRQIVART HHEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHH VETFGRLDVLVNNGAFQQPNEDLAGIDDAVFEDHFRTNVFGAFYVTKAALAHLKPGASVI HHHHHCEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE FTSSVNSKHPMPSLLAYSATKGALSNMVLSLSQLLADKGVRVNGVLPGPIWTPFIPSGMS EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC QDSVKSFGSQVPFGRPGQPAELASAYVMLASEESSYTSGALVTVAGAMPVF HHHHHHHHCCCCCCCCCCCHHHHHEEEEEECCCCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]