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The map label for this gene is rsmD [H]

Identifier: 170746518

GI number: 170746518

Start: 71498

End: 72055

Strand: Reverse

Name: rsmD [H]

Synonym: Mrad2831_0068

Alternate gene names: 170746518

Gene position: 72055-71498 (Counterclockwise)

Preceding gene: 170746519

Following gene: 170746513

Centisome position: 1.19

GC content: 75.09

Gene sequence:

>558_bases
ATGAGGATCGTCGGCGGCGCGTGGCGAGGCCGCCGGCTTGCCGCGCCGCGCACCGACGCCATCCGGCCGACCTCGGACCG
GCTGCGCGAGTCGGTGTTCAACGTGCTCGCGCACGCCTATGACGACGCCGTGGCCGGCGCCCGGGTCCTCGACCTGTTCG
CCGGCACGGGCGCCCTCGGCTTCGAGGCGCTGTCGCGGGGCGCGACCTACGCCCTCCTCGTCGACGAGGGCGCCGAGGCG
CGCGCGGTGATCCGCGAGAATATCGAGGCCCTCGGTGCCGAAGGCGTGACGCGCCTGTTCCGGCGGGACGCGACCCGCCT
CGGCCCGGCTTCCACAGCGGGCACCTTCTCGCTTGTCTTCTGCGATCCGCCCTACGGCCGCGATCTCGCGCCCCGCGCCC
TGAGAAGCGCCGCCGAGGGCGCGTGGCTCGCGCCGGGGGCTCTCATCGTCGTCGAGGAAGTCGAGGCCGCTCAGCTCGTC
TGGCCGGCCGGCTTCGCGGAGCTGGAGCGGCGCGTCTACGGCGACACGGCCGTGGCGATCGCCCGGTTCGCCGCCTGA

Upstream 100 bases:

>100_bases
CGCGCAGCGGCCCGGGCGGCGGCCCGAGCGCGGGCGGCCGTCCCGGTGCGCCGCGCGGCGGCGCCCGGCCCGGCGGCGGC
AGGCCGCCCCGCGGGACGCG

Downstream 100 bases:

>100_bases
ATCGCCCCTAGTCCCGAATGCTCGGAGCCGGATCCGCAGCGCCGACCTGGGGCCCGAAATGGATCGCCAGCCAGACGGTG
GGCGATTCGGTCCATTCGAC

Product: methyltransferase

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MRIVGGAWRGRRLAAPRTDAIRPTSDRLRESVFNVLAHAYDDAVAGARVLDLFAGTGALGFEALSRGATYALLVDEGAEA
RAVIRENIEALGAEGVTRLFRRDATRLGPASTAGTFSLVFCDPPYGRDLAPRALRSAAEGAWLAPGALIVVEEVEAAQLV
WPAGFAELERRVYGDTAVAIARFAA

Sequences:

>Translated_185_residues
MRIVGGAWRGRRLAAPRTDAIRPTSDRLRESVFNVLAHAYDDAVAGARVLDLFAGTGALGFEALSRGATYALLVDEGAEA
RAVIRENIEALGAEGVTRLFRRDATRLGPASTAGTFSLVFCDPPYGRDLAPRALRSAAEGAWLAPGALIVVEEVEAAQLV
WPAGFAELERRVYGDTAVAIARFAA
>Mature_185_residues
MRIVGGAWRGRRLAAPRTDAIRPTSDRLRESVFNVLAHAYDDAVAGARVLDLFAGTGALGFEALSRGATYALLVDEGAEA
RAVIRENIEALGAEGVTRLFRRDATRLGPASTAGTFSLVFCDPPYGRDLAPRALRSAAEGAWLAPGALIVVEEVEAAQLV
WPAGFAELERRVYGDTAVAIARFAA

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=178, Percent_Identity=38.7640449438202, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 19654; Mature: 19654

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVGGAWRGRRLAAPRTDAIRPTSDRLRESVFNVLAHAYDDAVAGARVLDLFAGTGALG
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FEALSRGATYALLVDEGAEARAVIRENIEALGAEGVTRLFRRDATRLGPASTAGTFSLVF
HHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
CDPPYGRDLAPRALRSAAEGAWLAPGALIVVEEVEAAQLVWPAGFAELERRVYGDTAVAI
ECCCCCCCCCHHHHHHHHCCCEECCCEEEEEECCCHHHEECCCCHHHHHHHHHCHHHHHH
ARFAA
HHHCC
>Mature Secondary Structure
MRIVGGAWRGRRLAAPRTDAIRPTSDRLRESVFNVLAHAYDDAVAGARVLDLFAGTGALG
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FEALSRGATYALLVDEGAEARAVIRENIEALGAEGVTRLFRRDATRLGPASTAGTFSLVF
HHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
CDPPYGRDLAPRALRSAAEGAWLAPGALIVVEEVEAAQLVWPAGFAELERRVYGDTAVAI
ECCCCCCCCCHHHHHHHHCCCEECCCEEEEEECCCHHHEECCCCHHHHHHHHHCHHHHHH
ARFAA
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]