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The map label for this gene is ydgD [H]

Identifier: 170684042

GI number: 170684042

Start: 1589709

End: 1590530

Strand: Reverse

Name: ydgD [H]

Synonym: EcSMS35_1601

Alternate gene names: 170684042

Gene position: 1590530-1589709 (Counterclockwise)

Preceding gene: 170681639

Following gene: 170683134

Centisome position: 31.38

GC content: 52.07

Gene sequence:

>822_bases
ATGCGTACAACCATTGCTGTAGTGTTGGGTGCAATTAGTTTGACGTCTGCTTTTGTGTTTGCAGATAAACCAGACGTTGC
CAAATCGGCAAACGATGAGGTCAGCACCCTGTTTTTTGGTCATGATGATCGTGTGCCAGTAAATGACACGACCCAATCAC
CGTGGGATGCGGTTGGGCAACTGGAAACGGCCAGCGGCAATTTATGTACGGCTACGCTGATTGCACCCAATCTGGCATTA
ACGGCAGGACACTGTTTATTGACGCCGCCAAAGGGTAAAGCCGATAAAGCGGTAGCGCTGCGTTTCGTGTCAAATAAAGG
TCTTTGGCGCTATGAGATCCACGACATAGAAGGCCGCGTTGACCCGACACTAGGAAAGCGGTTAAAAGCAGATGGGGATG
GCTGGATTGTACCTCCCGCAGCTGCGCCGTGGGACTTCGGTTTGATTGTGCTACGTAATCCCCCTTCTGGCATTACACCG
TTGCCGTTATTTGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCAGCTGGTCGTAAAGTGACTCAGGCGGGCTA
CCCTGAAGATCATCTCGATACGTTGTACAGTCATCAAAACTGTGAAGTGACTGGCTGGGCGCAAACGTCGGTGATGTCGC
ATCAGTGCGATACCTTGCCGGGAGACAGCGGTTCGCCTCTGATGTTGCATACCGATGACGGCTGGCAATTAATTGGGGTA
CAAAGCTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTATTCGCGACAAGCT
GGATCAACTGTCGCAAAAATAA

Upstream 100 bases:

>100_bases
ATCGTAGTTATCTGATTTTACTCCCACTTTCATCCCGTCCCGTCTATAGTATTTATGAGGGTTTGCTTTTAATAATCATA
ATTACCCACCAGAGTGTGAT

Downstream 100 bases:

>100_bases
TGTTCAAACGCTGCCCGACAGTGCGGGCAGCGTGTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGAC
CAGGCCAATCCAGCCTTTAC

Product: S1A family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MRTTIAVVLGAISLTSAFVFADKPDVAKSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLAL
TAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITP
LPLFEGDKAALTAALKAAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGV
QSSAPAAKDRWRADNRAISVTGIRDKLDQLSQK

Sequences:

>Translated_273_residues
MRTTIAVVLGAISLTSAFVFADKPDVAKSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLAL
TAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITP
LPLFEGDKAALTAALKAAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGV
QSSAPAAKDRWRADNRAISVTGIRDKLDQLSQK
>Mature_273_residues
MRTTIAVVLGAISLTSAFVFADKPDVAKSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLAL
TAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITP
LPLFEGDKAALTAALKAAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGV
QSSAPAAKDRWRADNRAISVTGIRDKLDQLSQK

Specific function: Unknown

COG id: COG3591

COG function: function code E; V8-like Glu-specific endopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S1B family [H]

Homologues:

Organism=Escherichia coli, GI1787882, Length=273, Percent_Identity=99.2673992673993, Blast_Score=555, Evalue=1e-159,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009003
- InterPro:   IPR018114
- InterPro:   IPR001254
- InterPro:   IPR008256 [H]

Pfam domain/function: PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 29215; Mature: 29215

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS00134 TRYPSIN_HIS ; PS00135 TRYPSIN_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTTIAVVLGAISLTSAFVFADKPDVAKSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQ
CCCHHHHHHHHHHHHEEEEECCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCC
LETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRV
EECCCCCEEEEEEECCCEEEECCCEEEECCCCCCCCEEEEEEECCCCEEEEEEEECCCCC
DPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITPLPLFEGDKAALTAALKAAGR
CCCHHHHEECCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCEECCCHHHHHHHHHHHCC
KVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGV
CHHCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEE
QSSAPAAKDRWRADNRAISVTGIRDKLDQLSQK
CCCCCCHHHHHCCCCCEEEEECHHHHHHHHHCC
>Mature Secondary Structure
MRTTIAVVLGAISLTSAFVFADKPDVAKSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQ
CCCHHHHHHHHHHHHEEEEECCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCC
LETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRV
EECCCCCEEEEEEECCCEEEECCCEEEECCCCCCCCEEEEEEECCCCEEEEEEEECCCCC
DPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITPLPLFEGDKAALTAALKAAGR
CCCHHHHEECCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCEECCCHHHHHHHHHHHCC
KVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGV
CHHCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEE
QSSAPAAKDRWRADNRAISVTGIRDKLDQLSQK
CCCCCCHHHHHCCCCCEEEEECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]