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The map label for this gene is yciM

Identifier: 170683676

GI number: 170683676

Start: 1871236

End: 1872405

Strand: Reverse

Name: yciM

Synonym: EcSMS35_1849

Alternate gene names: 170683676

Gene position: 1872405-1871236 (Counterclockwise)

Preceding gene: 170680512

Following gene: 170680162

Centisome position: 36.94

GC content: 52.31

Gene sequence:

>1170_bases
ATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGCAGAAGTGCGCAACAAAA
CAAGCAAGATGAAGCCAACCGCTTGTCGCGTGATTACGTAGCGGGGGTTAACTTCCTGCTTAGTAATCAACAGGATAAAG
CGGTAGATCTGTTTCTCGATATGCTTAAAGAGGATACAGGTACCGTTGAAGCCCACCTTACGCTCGGAAACCTGTTCCGT
TCGCGTGGCGAAGTTGATCGCGCTATTCGCATCCATCAGACCCTAATGGAAAGCGCCTCGCTGACCTATGAACAGCGGCT
TTTGGCGATTCAACAACTGGGGCGTGATTACATGGCTGCCGGGTTATACGACCGCGCGGAAGACATGTTCAATCAGCTGA
CCGATGAAACTGACTTCCGCATTGGCGCGCTGCAACAGTTGCTACAAATCTACCAGGCTACCAGCGAGTGGCAGAAAGCA
ATTGATGTTGCCGAACGCCTGGTGAAGCTGGGTAAAGATAAACAGCGCGTCGAAATTGCCCATTTCTACTGTGAGTTAGC
TCTGCAGCATATGGCCAGCGACGATCTCGATCGTGCCATGACTTTGCTAAAAAAAGGTGCGGCGGCAGATAAAAACAGCG
CCCGCGTATCCATCATGATGGGACGCGTGTTTATGGCGAAAGGAGAATACGCCAAAGCCGTCGAAAGTCTGCAACGTGTC
ATATCCCAGGACAGAGAACTGGTCAGCGAAACGCTGGAAATGCTGCAAACCTGCTACCAGCAGTTGGGTAAAACTGCCGA
ATGGGCAGAGTTCCTGCAGCGCGCGGTGGAAGAGAACACCGGTGCCGATGCTGAACTGATGCTTGCGGACATCATCGAAG
CGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGTCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAG
CTAATGGATTACCACTTAAATGAAGCGGAAGAAGGGCGTGCCAAAGAGAGTCTGATGGTGCTGCGTGACATGGTTGGCGA
GAAGGTGCGGAGTAAGCCTCGTTATCGCTGCCAGAAATGTGGGTTTACCGCATACACTCTCTACTGGCATTGTCCGTCTT
GTCGGGCCTGGTCAACCATTAAACCGATTCGCGGTCTTGATGGCCTGTAA

Upstream 100 bases:

>100_bases
GCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGCGCCGCACTCGTCAG
CGGCGAAGGAATAACTTTCT

Downstream 100 bases:

>100_bases
TTTTTAAAAAAATCCGACTTTAGTTACAACATACTAATTGTTGATGTTCCATTGTGCTCCGGTAGCTCGGGCGCAGAAAA
GCCTGCCAGGGGAGAAATCG

Product: tetratricopeptide repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFR
SRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA
IDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRV
ISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHK
LMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL

Sequences:

>Translated_389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFR
SRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA
IDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRV
ISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHK
LMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL
>Mature_389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFR
SRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA
IDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRV
ISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHK
LMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats

Homologues:

Organism=Escherichia coli, GI2367116, Length=389, Percent_Identity=100, Blast_Score=803, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCIM_ECO57 (P0AB60)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A85759
- PIR:   E90860
- RefSeq:   NP_287917.1
- RefSeq:   NP_309880.1
- ProteinModelPortal:   P0AB60
- SMR:   P0AB60
- EnsemblBacteria:   EBESCT00000023993
- EnsemblBacteria:   EBESCT00000057153
- GeneID:   912810
- GeneID:   961378
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z2526
- KEGG:   ecs:ECs1853
- GeneTree:   EBGT00050000010146
- HOGENOM:   HBG465026
- OMA:   FKGLNFL
- ProtClustDB:   PRK11788
- BioCyc:   ECOL83334:ECS1853-MONOMER
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734
- Gene3D:   G3DSA:1.25.40.10
- SMART:   SM00028

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44532; Mature: 44532

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS50005 TPR; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLD
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
MLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAA
HHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
GLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQRVEIA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
HFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRV
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHH
ISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
AQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKC
HHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
GFTAYTLYWHCPSCRAWSTIKPIRGLDGL
CCEEEEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLD
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
MLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAA
HHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
GLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQRVEIA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
HFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRV
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHH
ISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
AQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKC
HHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
GFTAYTLYWHCPSCRAWSTIKPIRGLDGL
CCEEEEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796