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The map label for this gene is yhjB [H]

Identifier: 170682867

GI number: 170682867

Start: 3891929

End: 3892531

Strand: Reverse

Name: yhjB [H]

Synonym: EcSMS35_3824

Alternate gene names: 170682867

Gene position: 3892531-3891929 (Counterclockwise)

Preceding gene: 170680242

Following gene: 170680372

Centisome position: 76.8

GC content: 48.09

Gene sequence:

>603_bases
ATGCAAATAGTCATGTTTGACAGGCAGTCAATATTTATTCATGGAATGAAAATCAGTTTACAGCAGCGTATTCCAGGAGT
GAGTATTCAGGGGGCCGGTCAGGCAGACGAGTTATGGCAAAAGCTGGAAAGTTACCCTGAAGCCTTAGTTATGCTCGATG
GCGATCAGGATGGTGAGTTTTGCTACTGGTTGCTGCAAAAAACCGTGGTGCAGTTTCCTGAGGTTAAGGTGTTAATTACG
GCGACGGATTGCAATAAACGGTGGTTACAGGAAGTTATCCATTTTAATGTGCTGGCCATTGTGCCTCGTGATTCAACCGT
TGAGACATTTGCGTTGGCGGTAAATAGTGCGGCGATGGGGATGATGTTTCTGCCGGGAGACTGGCGAACGACGCCGGAAA
AGGACATTAAAGATCTCAAATCGTTAAGCGCCCGCCAGCGGGAGATTTTAACCATGTTAGCGGCGGGCGAATCAAATAAG
GAGATCGGCAGGGCGCTGAATATCAGTACCGGAACGGTAAAAGCGCATCTGGAATCCCTGTATCGCCGTCTGGAAGTGAA
AAATCGCACCCAGGCGGCAATGATGTTAAATATCTCCTCCTGA

Upstream 100 bases:

>100_bases
TAGAATGGCCACCGCCAAATGGCGAATTCTTATTTTTTCTCGCGGGTAATACCCTTCCACTACTTAAGTCTTTTTAACGT
ATTCAGGTGGAGATTCAGTT

Downstream 100 bases:

>100_bases
AGAGGATAATTTTACAGCCAGCAGGAAGTTAGCGGCTGGCTGTAAAAATATTATGGTTCACCGTACAAACCAATTAAACG
GCGCACCACACCGTTAGTCC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGAGQADELWQKLESYPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLIT
ATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK
EIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS

Sequences:

>Translated_200_residues
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGAGQADELWQKLESYPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLIT
ATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK
EIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS
>Mature_200_residues
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGAGQADELWQKLESYPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLIT
ATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK
EIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789937, Length=200, Percent_Identity=99.5, Blast_Score=414, Evalue=1e-117,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 22575; Mature: 22575

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGAGQADELWQKLESYPEALVMLDGDQDGEF
CEEEEEECCEEEEEEEEEEHHHCCCCCEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCH
CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG
HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCEEEEEEECCCCHHHHHEEHHHHHCE
MMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCEECCCCCHHHHHHHHH
YRRLEVKNRTQAAMMLNISS
HHHHHCCCCCCEEEEEEECC
>Mature Secondary Structure
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGAGQADELWQKLESYPEALVMLDGDQDGEF
CEEEEEECCEEEEEEEEEEHHHCCCCCEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCH
CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG
HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCEEEEEEECCCCHHHHHEEHHHHHCE
MMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCEECCCCCHHHHHHHHH
YRRLEVKNRTQAAMMLNISS
HHHHHCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]