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The map label for this gene is yibH

Identifier: 170682468

GI number: 170682468

Start: 4005888

End: 4007024

Strand: Reverse

Name: yibH

Synonym: EcSMS35_3930

Alternate gene names: 170682468

Gene position: 4007024-4005888 (Counterclockwise)

Preceding gene: 170684003

Following gene: 170680375

Centisome position: 79.06

GC content: 53.03

Gene sequence:

>1137_bases
ATGGATCTATTGATTGTTTTAACTTACGTGGCGCTGGCGTGGGCGGTCTTTAAAATCTTCCGCATTCCGGTAAATCAGTG
GACGCTGGCGACGGCGGCGCTGGGAGGCGTGTTTCTGGTGAGTGGTTTGATTTTGTTGATGAACTACAACCACCCTTACA
CTTTTACCGCGCAAAAGGCAGTGATAGCGATCCCCATCACGCCACAGGTGACGGGAATTGTTACTGAAGTCACCGACAAA
AATAATCAGCTTATTCAGAAGGGCGAGGTGCTTTTTAAGCTCGACCCGGTTCGTTACCAGGCGCGAGTTGACAGACTTCA
GGCTGACCTGATGACGGCGACGCATAATATAAAGACGCTGCGCGCGCAGCTCACTGAAGCGCAGGCCAACACCACCCAGG
TTTCAGCGGAGCGCGACCGTCTGTTTAAAAATTATCAACGTTACCTGAAAGGCAGCCAGGCGGCGGTGAATCCGTTCTCG
GAACGTGACATCGACGATGCGCGGCAAAATTTCCTCGCGCAGGACGCGCTGGTGAAAGGCTCGGTGGCGGAGCAGGCGCA
GATCCAGAGCCAGCTCGACAGTATGGTTAACGGCGAGCAGTCGCAGATTGTGAGCTTAAGAGCGCAACTTACTGAAGCAA
AATATAACCTTGAGCAGACTGTCATTCGCGCACCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATAC
GCAGCTGCCTTGCCGCTACGTCCGGTGATGGTTTTCATCCCCGAGCAAAAACGGCAAATTGTCGCCCAATTTCGGCAGAA
CTCGCTGTTACGTCTGAAACCCGGCGATGATGCGGAAGTGGTGTTTAACGCGCTACCTGGGCAGGTGTTCCACGGCAAAC
TGACTAGTATTTTACCTGTCGTGCCAGGCGGTTCGTATCAGGCGCAAGGGGTACTGCAATCATTAACCGTCGTGCCCGGC
ACGGACGGTGTGCTGGGAACCATTGAACTGGACCCTAACGATGATATCGATGCTTTACCCGACGGCATCTACGCCCAGGT
GGCAGTCTACTCCGACCATTTCAGCCATGTTTCGGTGATGCGGAAAGTGCTGCTAAGAATGACCAGTTGGATGCATTATC
TTTATTTGGATCATTAA

Upstream 100 bases:

>100_bases
ACCCGGAAATCGCCGCACTTTCTGACCGAATTTCCCGGCTGGAGCATCAACTCGCCGCCGAGAAAAAGACTGACTATTCC
ACGTTCCCGGAGATCTAAAT

Downstream 100 bases:

>100_bases
ATAATATTAATGTATTGAATCTTGTAAATGTGGTTGAGAGCAAAAAATTGCAAATACAGGACATGAGAATTCGCTGTTCA
GGCAGCGAAACTCGAGCCCT

Product: auxiliary membrane fusion protein family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDK
NNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGVLQSLTVVPG
TDGVLGTIELDPNDDIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH

Sequences:

>Translated_378_residues
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDK
NNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGVLQSLTVVPG
TDGVLGTIELDPNDDIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH
>Mature_378_residues
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDK
NNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGVLQSLTVVPG
TDGVLGTIELDPNDDIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family

Homologues:

Organism=Escherichia coli, GI1790024, Length=378, Percent_Identity=100, Blast_Score=771, Evalue=0.0,
Organism=Escherichia coli, GI1790012, Length=378, Percent_Identity=77.2486772486772, Blast_Score=619, Evalue=1e-179,
Organism=Escherichia coli, GI1790519, Length=254, Percent_Identity=27.1653543307087, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87081951, Length=254, Percent_Identity=24.4094488188976, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788711, Length=238, Percent_Identity=22.6890756302521, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIBH_ECO57 (P0AFV1)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A86035
- PIR:   A98188
- RefSeq:   NP_290177.1
- RefSeq:   NP_312500.1
- ProteinModelPortal:   P0AFV1
- SMR:   P0AFV1
- EnsemblBacteria:   EBESCT00000027162
- EnsemblBacteria:   EBESCT00000055586
- GeneID:   915586
- GeneID:   960955
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z5021
- KEGG:   ecs:ECs4473
- GeneTree:   EBGT00050000009283
- HOGENOM:   HBG298323
- OMA:   SPFTELE
- ProtClustDB:   CLSK880732
- BioCyc:   ECOL83334:ECS4473-MONOMER
- InterPro:   IPR006143

Pfam domain/function: PF00529 HlyD

EC number: NA

Molecular weight: Translated: 41989; Mature: 41989

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1cd5105c)-; HASH(0x1d077a30)-; HASH(0x1d153ac4)-; HASH(0x1d5e948c)-; HASH(0x1d5cb850)-; HASH(0x1d43dedc)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKA
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCE
VIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTL
EEEEECCCCCCEEEEEECCCCCHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
RAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCC
SVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCCCEEEEEECCCCE
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPV
EEECCCCEEEEEECCHHHHHHHHHHHCCEEEECCCCCHHHHEECCCCCCCCCCHHHHEEE
VPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNDDIDALPDGIYAQVAVYSDHFSHVSVM
CCCCCCHHHHHHHHHEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEHHHHHHHHHH
RKVLLRMTSWMHYLYLDH
HHHHHHHHHHHHEEEECH
>Mature Secondary Structure
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKA
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCE
VIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTL
EEEEECCCCCCEEEEEECCCCCHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
RAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCC
SVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCCCEEEEEECCCCE
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPV
EEECCCCEEEEEECCHHHHHHHHHHHCCEEEECCCCCHHHHEECCCCCCCCCCHHHHEEE
VPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNDDIDALPDGIYAQVAVYSDHFSHVSVM
CCCCCCHHHHHHHHHEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEHHHHHHHHHH
RKVLLRMTSWMHYLYLDH
HHHHHHHHHHHHEEEECH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796