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The map label for this gene is ldrD [H]

Identifier: 170681290

GI number: 170681290

Start: 3925485

End: 3925652

Strand: Reverse

Name: ldrD [H]

Synonym: EcSMS35_3852

Alternate gene names: 170681290

Gene position: 3925652-3925485 (Counterclockwise)

Preceding gene: 170679996

Following gene: 170681661

Centisome position: 77.45

GC content: 51.79

Gene sequence:

>168_bases
TTGACTCTAGACCACTCAAGAATAGCCGCGAAACGTTGTCATTACAACACAGGCGGCTATATGACGCTCGCAGAGCTGGG
CATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTCTGATCGTGAACTGGCTGAACAAGC
GGAAGTAA

Upstream 100 bases:

>100_bases
AATGTTGCGGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAGAGAGAAAACCCCCGCACGTTGCAGGTATGCACCTGA
CAACACCACGGGGGCTAATC

Downstream 100 bases:

>100_bases
CGTGTCAGACGGGCGTCAGGCTGCCGTAATGGCAATTTGCGCCCGGACCAGGCCGCAGGGATAAAACTCTGCGGCCTTTT
TCGTAAGAAAAATGCAACGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 55; Mature: 54

Protein sequence:

>55_residues
MTLDHSRIAAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASLIVNWLNKRK

Sequences:

>Translated_55_residues
MTLDHSRIAAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASLIVNWLNKRK
>Mature_54_residues
TLDHSRIAAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASLIVNWLNKRK

Specific function: Toxic peptide whose overexpression causes rapid cell killing and nucleoid condensation of the host cell. Overexpression induces stress-response and a number of membrane protein genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the toxic peptide ldr family [H]

Homologues:

Organism=Escherichia coli, GI48994945, Length=35, Percent_Identity=94.2857142857143, Blast_Score=70, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 6141; Mature: 6010

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDHSRIAAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASLIVNWLNKRK
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLDHSRIAAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASLIVNWLNKRK
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]