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The map label for this gene is ydcN [H]

Identifier: 170680755

GI number: 170680755

Start: 1744528

End: 1745064

Strand: Reverse

Name: ydcN [H]

Synonym: EcSMS35_1740

Alternate gene names: 170680755

Gene position: 1745064-1744528 (Counterclockwise)

Preceding gene: 170683807

Following gene: 170680392

Centisome position: 34.43

GC content: 49.16

Gene sequence:

>537_bases
ATGGAAAATCTCGCTCGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACTGGC
CGAAGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAATCCAGCCCGACGGTCGCGACATTATGGA
AAATTGCCACCGGGTTGAACGTACCATTTTCAACATTTATTTCTCCGCCGCAGTCCGCTACACCTTCAGTTTATGATCCA
CAACAGCAGGCGATGGTGATCACTTCGCTGTTTCCTTATGATCCACAACTCTGCTTTGAACACTTCTCGATTCAGATGGC
ATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATC
TGTGCGTTGATGGTGAATGGCAGAGCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGT
AATGGTGGGGAGCAAACCGTACATTTTCATTCCCTCATCCATTACCCGCGCAGTTAA

Upstream 100 bases:

>100_bases
CAGACGCATAGTCACCTCGTGCGTTATAGCGTACAGGCACCGTAGCATTTGTCCGTTATAACGCACAAGTGATAAACTTC
CGTTTTGCCGGAGGAGTCGC

Downstream 100 bases:

>100_bases
GCGGGAAAACTATTTCGCAACGTCGCGCTTGTGGCTAAAATAGCAGCCATTTTTCAGCTACTGGATAAGAATGTGACCGT
ATCTTCTCATCGACTTGAAC

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQSATPSVYDP
QQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQSLNCGEGVRFAADVTHIYR
NGGEQTVHFHSLIHYPRS

Sequences:

>Translated_178_residues
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQSATPSVYDP
QQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQSLNCGEGVRFAADVTHIYR
NGGEQTVHFHSLIHYPRS
>Mature_178_residues
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQSATPSVYDP
QQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQSLNCGEGVRFAADVTHIYR
NGGEQTVHFHSLIHYPRS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=178, Percent_Identity=99.438202247191, Blast_Score=372, Evalue=1e-104,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 19717; Mature: 19717

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG
CCHHHHCCCCCCCCCCCCCCHHHHEEEEHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
VIEHVVVIDGQLDLCVDGEWQSLNCGEGVRFAADVTHIYRNGGEQTVHFHSLIHYPRS
CEEEEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEHHHHHCCCCC
>Mature Secondary Structure
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG
CCHHHHCCCCCCCCCCCCCCHHHHEEEEHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
VIEHVVVIDGQLDLCVDGEWQSLNCGEGVRFAADVTHIYRNGGEQTVHFHSLIHYPRS
CEEEEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]