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The map label for this gene is ynbD [H]

Identifier: 170680460

GI number: 170680460

Start: 1768727

End: 1770019

Strand: Reverse

Name: ynbD [H]

Synonym: EcSMS35_1761

Alternate gene names: 170680460

Gene position: 1770019-1768727 (Counterclockwise)

Preceding gene: 170683337

Following gene: 170684173

Centisome position: 34.92

GC content: 49.27

Gene sequence:

>1293_bases
TTGCTACAAGGAGCTGGCTGGTTATTGTTGCTGGCCCCGTTTTTCTTCTTCACATATGGATTTCTTAATCAGTTCACCGC
GACTCAGGATCTTAACAACCATGATATCCCCAGTCAGGTATTCGGTTGGGAAACGGCGATCCCTTTTCTTCCCTGGACTA
TTTTGCCTTACTGGAGTCTGGATCTTTTATATGGATTTTCGCTGTTCGTTTGTAGCTCGACATTTGAGCAGCGCCGTCTG
GTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGGTTTTTTTCTCTATCCGCTGAAGTTTAGTTTTATCCGTCC
TGAAGTGAGTGGGGTGACAGGATGGTTATTTTCGCAACTTGAATTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGC
ATATTATTCTCTGCTGGCTACTTTGGCGTCACTTTCGTCAGCATCTGGCTGTGAGGTGGCGTAAAGTCTGTGGCGGATGG
TTTTTACTCATCGCCATTTCGACGCTAACGACCTGGCAGCATCATTTTATTGATGTCATCACAGGGCTGGCGGTAGGTAT
GTTAATTGACTGGATGGTGCCCGTCGACCGTCGTTGGAATTATCAGAAACCTGATCAACGTCGAATCAAAATAGCACTGC
CATATGTCGTAGGCGCGTGCTCGTGCATTGTGTTGATGGAGCTAATGATAATGCTTCAGTTATGGTGGTCAGTCTGGTTA
TGTTGGCCAGTATTATCGCTACTCATTATTGGCCGTGGGTACGGTGGGCTTGGCGCGATAACAACAGGTAAAGATAGTCA
AGGGAAACTCCCGCCCGCCGTTTACTGGCTGACATTGCCATGGCGCATCGGGATGTGGCTGTCTATGCGTTGGTTTTGCC
TTCGCCTGGAGCCGGTGAGCAAAATTACTGCTGGTGTTTATTTAGGGGCGTTTCCACGACATATTCCGGCACAGAATGCG
GTTCTGGACGTCACCTTTGAATTCCCTCGCGGACGAGCGACAAAAGATCGACTCTATTTTTGTGTACCGATGTTGGATCT
GGTAGTTCCGGAAGAGGGGGAGCTCCGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCGGCGTTCTGG
TCCATTGCGCGTTGGGATTATCGCGCAGTGCGCTGGTGGTGGCGGCATGGCTGTTATGTTACGGACATTGTAAAACCGTT
GATGAAGCGATTAGTTATATTCGAGCCAGACGCTCGCGGATTGTGCTTAAGGAAGAGCACAAAGCGATGCTGAAATTATG
GGAAAACAGGTAA

Upstream 100 bases:

>100_bases
CATGATGCCGGATTTGATAAATGCACACAACGGATTGATGAGTGGGGCATTTTTACGGTTTCGATGGCGGTGCGTCGTGA
TAACTGAACGCCGGAACGTA

Downstream 100 bases:

>100_bases
GCGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAAATAGTGTCCGGTTATGCAGCAACAATACTGTCGATGGC
TGCTTTCGCGTCAGACTGTG

Product: PAP2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MLQGAGWLLLLAPFFFFTYGFLNQFTATQDLNNHDIPSQVFGWETAIPFLPWTILPYWSLDLLYGFSLFVCSSTFEQRRL
VHRLILATVMACCGFFLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAVRWRKVCGGW
FLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGACSCIVLMELMIMLQLWWSVWL
CWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPWRIGMWLSMRWFCLRLEPVSKITAGVYLGAFPRHIPAQNA
VLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGGVLVHCALGLSRSALVVAAWLLCYGHCKTV
DEAISYIRARRSRIVLKEEHKAMLKLWENR

Sequences:

>Translated_430_residues
MLQGAGWLLLLAPFFFFTYGFLNQFTATQDLNNHDIPSQVFGWETAIPFLPWTILPYWSLDLLYGFSLFVCSSTFEQRRL
VHRLILATVMACCGFFLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAVRWRKVCGGW
FLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGACSCIVLMELMIMLQLWWSVWL
CWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPWRIGMWLSMRWFCLRLEPVSKITAGVYLGAFPRHIPAQNA
VLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGGVLVHCALGLSRSALVVAAWLLCYGHCKTV
DEAISYIRARRSRIVLKEEHKAMLKLWENR
>Mature_430_residues
MLQGAGWLLLLAPFFFFTYGFLNQFTATQDLNNHDIPSQVFGWETAIPFLPWTILPYWSLDLLYGFSLFVCSSTFEQRRL
VHRLILATVMACCGFFLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAVRWRKVCGGW
FLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGACSCIVLMELMIMLQLWWSVWL
CWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPWRIGMWLSMRWFCLRLEPVSKITAGVYLGAFPRHIPAQNA
VLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGGVLVHCALGLSRSALVVAAWLLCYGHCKTV
DEAISYIRARRSRIVLKEEHKAMLKLWENR

Specific function: Unknown

COG id: COG0671

COG function: function code I; Membrane-associated phospholipid phosphatase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein-tyrosine phosphatase family [H]

Homologues:

Organism=Escherichia coli, GI1787679, Length=430, Percent_Identity=95.3488372093023, Blast_Score=816, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000387
- InterPro:   IPR000340
- InterPro:   IPR020422
- InterPro:   IPR000326
- InterPro:   IPR016130 [H]

Pfam domain/function: PF00782 DSPc; PF01569 PAP2 [H]

EC number: NA

Molecular weight: Translated: 49708; Mature: 49708

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS00383 TYR_PHOSPHATASE_1 ; PS50056 TYR_PHOSPHATASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCCC
>Mature Secondary Structure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HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]