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The map label for this gene is rssA [H]

Identifier: 170679923

GI number: 170679923

Start: 1928131

End: 1929075

Strand: Reverse

Name: rssA [H]

Synonym: EcSMS35_1907

Alternate gene names: 170679923

Gene position: 1929075-1928131 (Counterclockwise)

Preceding gene: 170683883

Following gene: 170681852

Centisome position: 38.06

GC content: 50.58

Gene sequence:

>945_bases
GTGGCTACGATTGCATTCCAGGGGAATCTTGCGGGAATAATGAGAAAGATAAAAATAGGGCTGGCGCTGGGATCTGGCGC
GGCGAGAGGTTGGTCGCATATTGGCGTTATTAATGCGCTAAAAAAAGTGGGTATTGAAATTGATATCGTTGCAGGATGCT
CAATTGGTTCGCTGGTGGGCGCGGCCTATGCATGCGATCGATTATCTGCGCTGGAAGATTGGGTAACCTCTTTCAGTTAT
TGGGATGTTTTACGCCTGATGGATCTCTCCTGGCAGCGCGGTGGGTTACTGCGCGGCGAGCGTGTCTTCAATCAATATCG
CGAAATAATGCCGGAAACAGAGATCGAAAATTGTTCCCGTCGCTTCGCGGCTGTTGCCACCAATTTAAGTACTGGGCGCG
AATTATGGTTTACTGAAGGCGATCTCCATCTTGCTATTCGTGCATCATGCAGTATTCCAGGACTAATGGCACCCGTTGCG
CATAACGGCTACTGGCTGGTTGATGGCGCTGTAGTTAACCCAATTCCTATTTCGCTCACGCGTGCATTGGGTGCTGATAT
TGTGATAGCGGTCGACCTGCAGCACGATGCTCATTTGATGCAACAAGATCTGCTCTCCTTTAATGTCAGTGAAGAAAATA
GCGAGAATGGTGATTCTCTGCCGTGGCATGCGCGTCTGAAAGAAAGGTTGGGCAGCATAACGACACGTCGGGCGGTGACA
GCGCCAACGGCAACAGAGATTATGACCACTTCTATCCAGGTGCTGGAGAACCGCCTTAAAAGGAACCGCATGGCAGGTGA
TCCGCCCGATATTCTGATTCAACCTGTTTGCCCGCAAATATCTACGCTTGATTTCCATCGCGCGCACGCTGCCATTGCGG
CTGGGCAGCTGGCAGTGGAAAAGAAAATGGACGAACTTTTGCCGTTGGTACGCACCAACATTTGA

Upstream 100 bases:

>100_bases
ACTACCACAGGGACAAAGCTGAGACACAAATAATCTCCCTGGAAACAATAACGGCGTATTAACCGCCTGAGTAGCACTAT
GTTAACCGAGCAGTAGCGAT

Downstream 100 bases:

>100_bases
CCAGAATTTTTATCTACACTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCA
GGGGAGAGAACATGACGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MATIAFQGNLAGIMRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGSLVGAAYACDRLSALEDWVTSFSY
WDVLRLMDLSWQRGGLLRGERVFNQYREIMPETEIENCSRRFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVA
HNGYWLVDGAVVNPIPISLTRALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGDSLPWHARLKERLGSITTRRAVT
APTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAHAAIAAGQLAVEKKMDELLPLVRTNI

Sequences:

>Translated_314_residues
MATIAFQGNLAGIMRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGSLVGAAYACDRLSALEDWVTSFSY
WDVLRLMDLSWQRGGLLRGERVFNQYREIMPETEIENCSRRFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVA
HNGYWLVDGAVVNPIPISLTRALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGDSLPWHARLKERLGSITTRRAVT
APTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAHAAIAAGQLAVEKKMDELLPLVRTNI
>Mature_313_residues
ATIAFQGNLAGIMRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGSLVGAAYACDRLSALEDWVTSFSYW
DVLRLMDLSWQRGGLLRGERVFNQYREIMPETEIENCSRRFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAH
NGYWLVDGAVVNPIPISLTRALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGDSLPWHARLKERLGSITTRRAVTA
PTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAHAAIAAGQLAVEKKMDELLPLVRTNI

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=193, Percent_Identity=31.6062176165803, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI260656037, Length=193, Percent_Identity=31.6062176165803, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI116256487, Length=193, Percent_Identity=31.6062176165803, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI260656043, Length=192, Percent_Identity=31.7708333333333, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI260656039, Length=193, Percent_Identity=31.6062176165803, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI148727335, Length=191, Percent_Identity=30.3664921465969, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI148727290, Length=191, Percent_Identity=30.3664921465969, Blast_Score=96, Evalue=4e-20,
Organism=Escherichia coli, GI226510936, Length=301, Percent_Identity=99.6677740863787, Blast_Score=615, Evalue=1e-178,
Organism=Caenorhabditis elegans, GI193204778, Length=200, Percent_Identity=33, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI71997289, Length=166, Percent_Identity=31.9277108433735, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71997299, Length=166, Percent_Identity=31.9277108433735, Blast_Score=78, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6323581, Length=313, Percent_Identity=29.073482428115, Blast_Score=106, Evalue=6e-24,
Organism=Drosophila melanogaster, GI28571388, Length=190, Percent_Identity=31.5789473684211, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI281376913, Length=190, Percent_Identity=31.5789473684211, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 34328; Mature: 34197

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS01237 UPF0028

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIAFQGNLAGIMRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGSLVG
CEEEEECCCHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
AAYACDRLSALEDWVTSFSYWDVLRLMDLSWQRGGLLRGERVFNQYREIMPETEIENCSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
RFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAHNGYWLVDGAVVNPIPISLT
HHHHHHHCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHCCCCEEEECCCEECCCCHHHH
RALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGDSLPWHARLKERLGSITTRRAVT
HHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHEEC
APTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAHAAIAAGQLAVE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
KKMDELLPLVRTNI
HHHHHHHHHHHCCC
>Mature Secondary Structure 
ATIAFQGNLAGIMRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGSLVG
EEEEECCCHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
AAYACDRLSALEDWVTSFSYWDVLRLMDLSWQRGGLLRGERVFNQYREIMPETEIENCSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
RFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAHNGYWLVDGAVVNPIPISLT
HHHHHHHCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHCCCCEEEECCCEECCCCHHHH
RALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGDSLPWHARLKERLGSITTRRAVT
HHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHEEC
APTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAHAAIAAGQLAVE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
KKMDELLPLVRTNI
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]