Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
---|---|
Accession | NC_010475 |
Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170077466
Identifier: 170077466
GI number: 170077466
Start: 869880
End: 871322
Strand: Reverse
Name: 170077466
Synonym: SYNPCC7002_A0844
Alternate gene names: NA
Gene position: 871322-869880 (Counterclockwise)
Preceding gene: 170077467
Following gene: 170077464
Centisome position: 28.97
GC content: 50.24
Gene sequence:
>1443_bases ATGGCTTTTACTGGGGAAGAAAAATCTTCCCAAAATCCAACCATCGCAACCCCCTCAACGGACAATTCCCCGCAACAAAA ACAAGAGTTTAATGCCTGGCAACTGTGGAACATGAGCATTGGCTTCCTGGGAATTCAGTTTGGTTGGGGCCTGCAGATGG CCAATATGAGCTCTATTTTTGAACATCTCGGCGCCAGTGCCCACAGTATTCCGATTCTTTGGTTGGCGGCCCCCCTAACG GGTCTTTTGGTACAACCGATCATTGGCAATTTAAGTGATTACACTTGGACTCCCCTGGGACGCCGTCGCCCTTACATTCT CGTGGGGGCCATCTTAGCGTCCATGGCGTTAGTCCTTATGCCCCAATGTGGCAGCCTTTGGATGGCGGCGGGACTCCTGT GGATCTTAGATACCAGTGCCAATACGAGTATGGTGCCGTTTCGGGCTTTCGTTGGCGATTTACTGCCCCAGCAGCAACGG ACAAAAGGGTTTGCCATGCAGAGCGTGATGGTTGGGCTAGGGGCGATCGCCGCTTCGATGTTGCCTTGGCTCCTGAGTCA CTTATTTGCTGTCAATTCCACCACTGGCCCAGATCAGCAAATTCCCCAATCTGTCACCTGGTCTTTTTATATTGGTGCCG GGCTTTTTCTCACCACTGTACTGTGGACGGTGCTGACCACCTCAGAATCTCCCCCTCCGGATTTAGACCGCTTCGACCAA CTCAAGGAAAAACGGGGTGGTATCCGCCAGAGTTTCAGTGAAACCTGGCAAGTGTTGGGACAAATGCCACCGACGATGTA TCGACTTGCTTGGGTGCAAATTTTTACCTGGTTAGGAATTTTTTGTTTTTTTATTTACTTCCCGCCAGCGGTAGCCCGGA ATATTTTCGGGGCTGTGGATATTCAGTCAACCCTCTATAACCAAGGCATTGAATGGGCAGGGCTTTGTTTTGCGGTGTTT AATGCCGTCTGTATTCCTTTCTCGTTCCTGTTACCCTGGTTAACCCGTCGCCTTGGTCGCAAGGTGATCCACATCATTTG TCTTTTGTGTGGCGGCTTTAGTCTGATTGCCCTCTTAAAAATTCAGCAACCCTGGCTGCTTTTGCCTTCGATGGTTGGTT TTGGCTTGGCCTGGGCCAGTGCCCAAGCGATCCCCTATGCCATTTTGACCTACGCTTTACCGACCCAAAGACGGGGCATT TACCAGGGCATTTTTAACTTTTTTATTGTGCTACCAGAAATTGCCGTTTCCCTAGGCTTTGGCTGGATCATGGAACATTG GCTCCAGGATAATCGACTGACTGCTGTGGTCTTGGGGGGAAGTTTTCTCGTGATTGCAGCGGCTTTGATGTTATTTGTGC CGACGGAGGCAAAACAATTAGCGGGTCTAAAAACATCACCACAGCAAATGGCAGAGCCTTCGGTGGTCGATTCAACGGTT TAG
Upstream 100 bases:
>100_bases GTTGGGCCGCTAGAATGAAATTATGACAACCAATGGGCGATGGTCCTCTAGTCCTCAACTTCACCCATAGGGCGATCGCT CGGCAACTGGAGAATTTTAT
Downstream 100 bases:
>100_bases GAAGCTTGGGAAATTTGGGCGATCGCCTGGTCTTGGGTCAATAGATCGAGGGCGGCTTGATATTGCAGATCCGTCTCACT CCCCATCATTGCATAGCCGA
Product: transport protein, major facilitator superfamily protein
Products: NA
Alternate protein names: Sugar Transporter; Transporter Facilitator Family; Facilitator Superfamily Permease; Facilitator Superfamily Protein; SugarCation Symporter; Facilitator Superfamily Transporter Permease; Cytoplasmic Membrane Maltose Transporter MalY; Transport Protein Facilitator Superfamily Protein; MFS Superfamily Sugcific Permease; Facilitator Superfamily Transmembrane Protein; Facilitator Family Transporter; Sucrose Transporter Protein
Number of amino acids: Translated: 480; Mature: 479
Protein sequence:
>480_residues MAFTGEEKSSQNPTIATPSTDNSPQQKQEFNAWQLWNMSIGFLGIQFGWGLQMANMSSIFEHLGASAHSIPILWLAAPLT GLLVQPIIGNLSDYTWTPLGRRRPYILVGAILASMALVLMPQCGSLWMAAGLLWILDTSANTSMVPFRAFVGDLLPQQQR TKGFAMQSVMVGLGAIAASMLPWLLSHLFAVNSTTGPDQQIPQSVTWSFYIGAGLFLTTVLWTVLTTSESPPPDLDRFDQ LKEKRGGIRQSFSETWQVLGQMPPTMYRLAWVQIFTWLGIFCFFIYFPPAVARNIFGAVDIQSTLYNQGIEWAGLCFAVF NAVCIPFSFLLPWLTRRLGRKVIHIICLLCGGFSLIALLKIQQPWLLLPSMVGFGLAWASAQAIPYAILTYALPTQRRGI YQGIFNFFIVLPEIAVSLGFGWIMEHWLQDNRLTAVVLGGSFLVIAAALMLFVPTEAKQLAGLKTSPQQMAEPSVVDSTV
Sequences:
>Translated_480_residues MAFTGEEKSSQNPTIATPSTDNSPQQKQEFNAWQLWNMSIGFLGIQFGWGLQMANMSSIFEHLGASAHSIPILWLAAPLT GLLVQPIIGNLSDYTWTPLGRRRPYILVGAILASMALVLMPQCGSLWMAAGLLWILDTSANTSMVPFRAFVGDLLPQQQR TKGFAMQSVMVGLGAIAASMLPWLLSHLFAVNSTTGPDQQIPQSVTWSFYIGAGLFLTTVLWTVLTTSESPPPDLDRFDQ LKEKRGGIRQSFSETWQVLGQMPPTMYRLAWVQIFTWLGIFCFFIYFPPAVARNIFGAVDIQSTLYNQGIEWAGLCFAVF NAVCIPFSFLLPWLTRRLGRKVIHIICLLCGGFSLIALLKIQQPWLLLPSMVGFGLAWASAQAIPYAILTYALPTQRRGI YQGIFNFFIVLPEIAVSLGFGWIMEHWLQDNRLTAVVLGGSFLVIAAALMLFVPTEAKQLAGLKTSPQQMAEPSVVDSTV >Mature_479_residues AFTGEEKSSQNPTIATPSTDNSPQQKQEFNAWQLWNMSIGFLGIQFGWGLQMANMSSIFEHLGASAHSIPILWLAAPLTG LLVQPIIGNLSDYTWTPLGRRRPYILVGAILASMALVLMPQCGSLWMAAGLLWILDTSANTSMVPFRAFVGDLLPQQQRT KGFAMQSVMVGLGAIAASMLPWLLSHLFAVNSTTGPDQQIPQSVTWSFYIGAGLFLTTVLWTVLTTSESPPPDLDRFDQL KEKRGGIRQSFSETWQVLGQMPPTMYRLAWVQIFTWLGIFCFFIYFPPAVARNIFGAVDIQSTLYNQGIEWAGLCFAVFN AVCIPFSFLLPWLTRRLGRKVIHIICLLCGGFSLIALLKIQQPWLLLPSMVGFGLAWASAQAIPYAILTYALPTQRRGIY QGIFNFFIVLPEIAVSLGFGWIMEHWLQDNRLTAVVLGGSFLVIAAALMLFVPTEAKQLAGLKTSPQQMAEPSVVDSTV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53054; Mature: 52923
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFTGEEKSSQNPTIATPSTDNSPQQKQEFNAWQLWNMSIGFLGIQFGWGLQMANMSSIF CCCCCCCCCCCCCEEECCCCCCCCHHHHHCCCEEEECCCEEEEEEEECCCCCHHHHHHHH EHLGASAHSIPILWLAAPLTGLLVQPIIGNLSDYTWTPLGRRRPYILVGAILASMALVLM HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH PQCGSLWMAAGLLWILDTSANTSMVPFRAFVGDLLPQQQRTKGFAMQSVMVGLGAIAASM CCCCHHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LPWLLSHLFAVNSTTGPDQQIPQSVTWSFYIGAGLFLTTVLWTVLTTSESPPPDLDRFDQ HHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH LKEKRGGIRQSFSETWQVLGQMPPTMYRLAWVQIFTWLGIFCFFIYFPPAVARNIFGAVD HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH IQSTLYNQGIEWAGLCFAVFNAVCIPFSFLLPWLTRRLGRKVIHIICLLCGGFSLIALLK HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQQPWLLLPSMVGFGLAWASAQAIPYAILTYALPTQRRGIYQGIFNFFIVLPEIAVSLGF HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH GWIMEHWLQDNRLTAVVLGGSFLVIAAALMLFVPTEAKQLAGLKTSPQQMAEPSVVDSTV HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCCCCC >Mature Secondary Structure AFTGEEKSSQNPTIATPSTDNSPQQKQEFNAWQLWNMSIGFLGIQFGWGLQMANMSSIF CCCCCCCCCCCCEEECCCCCCCCHHHHHCCCEEEECCCEEEEEEEECCCCCHHHHHHHH EHLGASAHSIPILWLAAPLTGLLVQPIIGNLSDYTWTPLGRRRPYILVGAILASMALVLM HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH PQCGSLWMAAGLLWILDTSANTSMVPFRAFVGDLLPQQQRTKGFAMQSVMVGLGAIAASM CCCCHHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LPWLLSHLFAVNSTTGPDQQIPQSVTWSFYIGAGLFLTTVLWTVLTTSESPPPDLDRFDQ HHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH LKEKRGGIRQSFSETWQVLGQMPPTMYRLAWVQIFTWLGIFCFFIYFPPAVARNIFGAVD HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH IQSTLYNQGIEWAGLCFAVFNAVCIPFSFLLPWLTRRLGRKVIHIICLLCGGFSLIALLK HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQQPWLLLPSMVGFGLAWASAQAIPYAILTYALPTQRRGIYQGIFNFFIVLPEIAVSLGF HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH GWIMEHWLQDNRLTAVVLGGSFLVIAAALMLFVPTEAKQLAGLKTSPQQMAEPSVVDSTV HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA