| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077405
Identifier: 170077405
GI number: 170077405
Start: 808944
End: 810554
Strand: Reverse
Name: 170077405
Synonym: SYNPCC7002_A0782
Alternate gene names: NA
Gene position: 810554-808944 (Counterclockwise)
Preceding gene: 170077413
Following gene: 170077403
Centisome position: 26.95
GC content: 47.42
Gene sequence:
>1611_bases ATGACTTCTTTGAAAACTGTATCTTTAGCTGCAACCGCTTTTGTGACGATGGCCAGCCAGGCGATCGCCGCAGATAACCA AGGATTGCTCGAACAAATTAATCAGTACAGTGCGAACAGTGCTACCGCTCAAGTCAATAGTATTTTCCAGCTCAGCGATG TTTCTCCCTCTGACTGGGCCTTTGATGCGCTGCGAAATTTAGTCGAAAACTACAACTGTATTGTTGGCTATCCCGATGGT ACCTATCGTGGCAACCGTCCCCTCAGTCGTTATGAATTTGCCGCTGGTTTAAATGCCTGTTTACAGCAAATTGAGCGGCT GATCACCAGTGGCAGTTCTGAAGTTACGGCAGAAGATCTCGCTGCGCTACGTCGCCTCGTTAATGAATTTGAAGCAGAAC TCGCAACCCTCGGAGCCCGCGTTGATGACCTCGAAGGCCGCGTCGAATTCCTCGAAGATCATCAGTTTTCAACGACGACC AAGCTGGTGGGCGAAGTTTCTTTTAATGTTTCTGATGCTTTTGGCGATGGCATCGATGATGCCCAAACCGTTTTTCAAGA CAAAGTTCGCTTAATGCTAGTCACCAGCTTTACTGGCAAAGATCGGCTCTATACACGTTTAAGTGCCGGAAATTCTGGCC CTTCATTTACAGGGCAATACGATACTTTGGGATCTGGATTTGTCCCTAGAACTCAAGAAGGACGTTTTTCTTATGATGGT GAACGTGACAACGACGTCACAATCGATCGACTGCACTATGCCTTTCCAGTTGGTGATAGCACAACTGTCACGGCGATGGC GATTCTCGGTGCTCACCACTTCTATGCAGATACCTTCAACACAGGTCTAGAAGCTGGTGGTGGTTCAAATGGTGCCCTCT CTCGTTTCGGTGAGCGCAACCCAATTTATCGTCTGGGGATTGGTACTTCCACTACCGGGATTGGGATTAAACATGACTTT AATGACGTCTTCCAGCTTTCGGCGGGATATCTTGCAACAAATGGCAGTGATCCGAGCGAAGGAGAAGGACTATTTAACGG CACCTACTCCGCAATGGCGCAATTGGCAATCAAGCCCAGTGACAAGTTTAAATTTGGGGTGAACTATGTCCGCGGCTATG CTACTGATAGTAGTGATTTTGCCTATGGTGGTACGGGAACTGGCTGGGCTAATAATCTGAATAACTCCGGCATGGGCATG GCTATAAACAATGTGGAAACGAATTCGTTTGGTGGCCAGGTTCAATGGGATGTTACCGATAAAATCAGTCTTCGCGGTTG GGTCGGCTATACCGATGCCAAGTTCGATGAAGGTGAAGCGGATATCTGGACTTGGGCTGGTATTTTGGCATTGCCTGACC TTGGTAAGCCTGGCAACATGGGGGCAATCATCGTTGGTTCTGAGCCCTACGCCACAAACCTAGAAATTGGTGGCAGTACA CCCCGAGGCTTTACTGATGATATGCCTTTACACATTGAAGGGCTTTATAAATATCAGTTGAGCAAGAATATTTCCATTAC CCCTGGTGTAATTTGGCTGATTAACCCAAATCAAAATGAGGATAACGAAGACATCATCATTGGCACGATTCGGACAACCT TCTCGTTCTAG
Upstream 100 bases:
>100_bases AGTCATGGCAAAACTAAGCCATTCATTTTTTAACCCCGACTTCAACTTTGGTTAACCTTGCCAAAATCAAAGCTTCGGGT GTGAGGACAAACACCAAACT
Downstream 100 bases:
>100_bases AGGAGCTGGCAGCGAGTGAAGCTGCTTAACTGAAAATGCTGAAAAATAATGACCTGACCCTGGAAGCAATTCTAGGGTTT TTTCTTATGAATCACCAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 536; Mature: 535
Protein sequence:
>536_residues MTSLKTVSLAATAFVTMASQAIAADNQGLLEQINQYSANSATAQVNSIFQLSDVSPSDWAFDALRNLVENYNCIVGYPDG TYRGNRPLSRYEFAAGLNACLQQIERLITSGSSEVTAEDLAALRRLVNEFEAELATLGARVDDLEGRVEFLEDHQFSTTT KLVGEVSFNVSDAFGDGIDDAQTVFQDKVRLMLVTSFTGKDRLYTRLSAGNSGPSFTGQYDTLGSGFVPRTQEGRFSYDG ERDNDVTIDRLHYAFPVGDSTTVTAMAILGAHHFYADTFNTGLEAGGGSNGALSRFGERNPIYRLGIGTSTTGIGIKHDF NDVFQLSAGYLATNGSDPSEGEGLFNGTYSAMAQLAIKPSDKFKFGVNYVRGYATDSSDFAYGGTGTGWANNLNNSGMGM AINNVETNSFGGQVQWDVTDKISLRGWVGYTDAKFDEGEADIWTWAGILALPDLGKPGNMGAIIVGSEPYATNLEIGGST PRGFTDDMPLHIEGLYKYQLSKNISITPGVIWLINPNQNEDNEDIIIGTIRTTFSF
Sequences:
>Translated_536_residues MTSLKTVSLAATAFVTMASQAIAADNQGLLEQINQYSANSATAQVNSIFQLSDVSPSDWAFDALRNLVENYNCIVGYPDG TYRGNRPLSRYEFAAGLNACLQQIERLITSGSSEVTAEDLAALRRLVNEFEAELATLGARVDDLEGRVEFLEDHQFSTTT KLVGEVSFNVSDAFGDGIDDAQTVFQDKVRLMLVTSFTGKDRLYTRLSAGNSGPSFTGQYDTLGSGFVPRTQEGRFSYDG ERDNDVTIDRLHYAFPVGDSTTVTAMAILGAHHFYADTFNTGLEAGGGSNGALSRFGERNPIYRLGIGTSTTGIGIKHDF NDVFQLSAGYLATNGSDPSEGEGLFNGTYSAMAQLAIKPSDKFKFGVNYVRGYATDSSDFAYGGTGTGWANNLNNSGMGM AINNVETNSFGGQVQWDVTDKISLRGWVGYTDAKFDEGEADIWTWAGILALPDLGKPGNMGAIIVGSEPYATNLEIGGST PRGFTDDMPLHIEGLYKYQLSKNISITPGVIWLINPNQNEDNEDIIIGTIRTTFSF >Mature_535_residues TSLKTVSLAATAFVTMASQAIAADNQGLLEQINQYSANSATAQVNSIFQLSDVSPSDWAFDALRNLVENYNCIVGYPDGT YRGNRPLSRYEFAAGLNACLQQIERLITSGSSEVTAEDLAALRRLVNEFEAELATLGARVDDLEGRVEFLEDHQFSTTTK LVGEVSFNVSDAFGDGIDDAQTVFQDKVRLMLVTSFTGKDRLYTRLSAGNSGPSFTGQYDTLGSGFVPRTQEGRFSYDGE RDNDVTIDRLHYAFPVGDSTTVTAMAILGAHHFYADTFNTGLEAGGGSNGALSRFGERNPIYRLGIGTSTTGIGIKHDFN DVFQLSAGYLATNGSDPSEGEGLFNGTYSAMAQLAIKPSDKFKFGVNYVRGYATDSSDFAYGGTGTGWANNLNNSGMGMA INNVETNSFGGQVQWDVTDKISLRGWVGYTDAKFDEGEADIWTWAGILALPDLGKPGNMGAIIVGSEPYATNLEIGGSTP RGFTDDMPLHIEGLYKYQLSKNISITPGVIWLINPNQNEDNEDIIIGTIRTTFSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SLH (S-layer homology) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007049 - InterPro: IPR001119 [H]
Pfam domain/function: PF04966 OprB; PF00395 SLH [H]
EC number: NA
Molecular weight: Translated: 57896; Mature: 57765
Theoretical pI: Translated: 4.25; Mature: 4.25
Prosite motif: PS01072 SLH_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLKTVSLAATAFVTMASQAIAADNQGLLEQINQYSANSATAQVNSIFQLSDVSPSDWA CCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHEEEECCCCCCHHH FDALRNLVENYNCIVGYPDGTYRGNRPLSRYEFAAGLNACLQQIERLITSGSSEVTAEDL HHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH AALRRLVNEFEAELATLGARVDDLEGRVEFLEDHQFSTTTKLVGEVSFNVSDAFGDGIDD HHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHCCCCCHHHHEEEEEEEEECHHCCCCCCH AQTVFQDKVRLMLVTSFTGKDRLYTRLSAGNSGPSFTGQYDTLGSGFVPRTQEGRFSYDG HHHHHHCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ERDNDVTIDRLHYAFPVGDSTTVTAMAILGAHHFYADTFNTGLEAGGGSNGALSRFGERN CCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCC PIYRLGIGTSTTGIGIKHDFNDVFQLSAGYLATNGSDPSEGEGLFNGTYSAMAQLAIKPS CEEEEECCCCCCCCCEECCCHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHEEECCC DKFKFGVNYVRGYATDSSDFAYGGTGTGWANNLNNSGMGMAINNVETNSFGGQVQWDVTD CCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECC KISLRGWVGYTDAKFDEGEADIWTWAGILALPDLGKPGNMGAIIVGSEPYATNLEIGGST CEEEEEEECCCCCCCCCCCCCEEEHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEECCCC PRGFTDDMPLHIEGLYKYQLSKNISITPGVIWLINPNQNEDNEDIIIGTIRTTFSF CCCCCCCCCEEEEEEEEEEECCCCEECCCEEEEECCCCCCCCCCEEEEEEEEECCC >Mature Secondary Structure TSLKTVSLAATAFVTMASQAIAADNQGLLEQINQYSANSATAQVNSIFQLSDVSPSDWA CCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHEEEECCCCCCHHH FDALRNLVENYNCIVGYPDGTYRGNRPLSRYEFAAGLNACLQQIERLITSGSSEVTAEDL HHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH AALRRLVNEFEAELATLGARVDDLEGRVEFLEDHQFSTTTKLVGEVSFNVSDAFGDGIDD HHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHCCCCCHHHHEEEEEEEEECHHCCCCCCH AQTVFQDKVRLMLVTSFTGKDRLYTRLSAGNSGPSFTGQYDTLGSGFVPRTQEGRFSYDG HHHHHHCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ERDNDVTIDRLHYAFPVGDSTTVTAMAILGAHHFYADTFNTGLEAGGGSNGALSRFGERN CCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCC PIYRLGIGTSTTGIGIKHDFNDVFQLSAGYLATNGSDPSEGEGLFNGTYSAMAQLAIKPS CEEEEECCCCCCCCCEECCCHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHEEECCC DKFKFGVNYVRGYATDSSDFAYGGTGTGWANNLNNSGMGMAINNVETNSFGGQVQWDVTD CCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECC KISLRGWVGYTDAKFDEGEADIWTWAGILALPDLGKPGNMGAIIVGSEPYATNLEIGGST CEEEEEEECCCCCCCCCCCCCEEEHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEECCCC PRGFTDDMPLHIEGLYKYQLSKNISITPGVIWLINPNQNEDNEDIIIGTIRTTFSF CCCCCCCCCEEEEEEEEEEECCCCEECCCEEEEECCCCCCCCCCEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]