| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077313
Identifier: 170077313
GI number: 170077313
Start: 718941
End: 720329
Strand: Reverse
Name: 170077313
Synonym: SYNPCC7002_A0690
Alternate gene names: NA
Gene position: 720329-718941 (Counterclockwise)
Preceding gene: 170077314
Following gene: 170077312
Centisome position: 23.95
GC content: 52.56
Gene sequence:
>1389_bases ATGGCGGCAGTGTGGCAGCAGATTCTCTTTTTGCGCTTTCCCTTTGAGCCTTGGTTACGGGCCAGTGTCAGTTACCGGGT GTTTGGACTTTTGCAGGGCTGGCGGGGCGGCAGTTTGCTATTGCAGTGGGCAGAACCCCTGGGGGCAATGATTCTCTGTG TATTGTTGGTGGCAGCGCCCTTTGTCTCGACAACCTTAATCGGATTTTTGCTGTTGGCCTGTGCGGGCTATTGGATTTTG CTAAGTCTGTCTGATCTGCCCCTGGGACGGGTGACGGGAATTCATCTTTTGGTTGCGCTGTATGGGGGCATCGCGGCGAT CGCCACGGTCTTGTCGCCAGTTAAGGGGGCGGCCCTGTCTGGGTTGGTGCAGTTGTTGCTATATATGATTTTCTTTGCGT TTTGTGCGCGGGTCTTGCGATCGCCCAAAATTCTCGCGGCGGTCATTTGGGTGTATTTAATGGTGTCCCTGGTGGTGAGT GGCTATGGTATTCGTCAGGAATTTTTTGGGGTAGAACAGTTGGCCACCTGGAACGATCCCTTGTCGGAGTTTGCCAATGA TACACGGGTTTACAGTTACCTAGGCAACCCGAATCTTTTGGCGGGTTATCTCCTGGGGGCGATCGCCTTTAGTGGCGTAG CGATGCTGATTTGGCGCACCAAGATCCAGAAAACTTTAGCAGCGGTCATGTTTGTAACCAATGCGGCTTGCTTATTTTTT ACCGATAGTCGGGGGGGCTGGCTGGCGATGGTGGGAGCGGCCATTGTGGGGGGATTATTACTCTACAGTTGGTATGGCGA TCGCCTCAGTCCTTTTTGGCGTAAATGGTTGCTGCCCCTGTGTTTCGGCTTTGGGGCGGGGTTACTACTCATTGCGGTAT TGGGCGTTGATGCCATTCGCCTACGGTTGTTGAGTATTTTTTCCTGGCGGGGCGATAGTAGTAATAATTTCCGGATTAAT GTGTGGTTGGCGGTGCTGCGGATGATTGGCGATCGCCCCCTGCTGGGGATTGGGCCAGGCCATGATGCCTTTAATGCGGT GTACCCCCAGTATATGGAAAGTCGTTTTTCGGCCCTGAGTGCCTATTCAATTTTTCTGGAGACCGCTGTGGAAACTGGTT TACTGGGTTTGACCACATTTGTGTGGCTGCTGATCAATATCTTTAGCCAAGCTTTACAAAGCCTTAAAGACTTTCAGTCC CAGCATAAAATAGAAGGACTATGGTTAGTTGGGGCGATCGCCGCGATGACAGGACTGTTGATCCAGGGCCTCTTTGATAC CGTTTGGTATCGTCCCCAGGTCAATACCCTCTGGTGGTTGATGGTGGGCATTATTGCCGCCCAGATCCCCCCGTGCCAAC CCACTGGAAGAGACAACCCCAGCCCTTAA
Upstream 100 bases:
>100_bases GATCTATACGAAAAGCAATCCCTCGATGAGTTGTATGGGAACGACGACGGCTAAATCTCTTTTACAATGAACAGTTACAC AATACTGAGGTTGATGGTTC
Downstream 100 bases:
>100_bases TCTAGATTATTTTTTCTGGCTGAGCTACCGGGGAACTTTTTGTCCCGTGGTTTCAGCGTGCGGCCTGAAATTTTGATCTA CATCTGCTCTTTGGAGAGGA
Product: bicarbonate transporter, ICT family protein
Products: NA
Alternate protein names: Bicarbonate Transporter; Inorganic Carbon Transporter; O-Antigen Polymerase Family; Heptosyltransferase Family; IctB Family Bicarbonate Transporter; Integral Membrane Protein; Bicarbonate Transporter ICT Family Protein
Number of amino acids: Translated: 462; Mature: 461
Protein sequence:
>462_residues MAAVWQQILFLRFPFEPWLRASVSYRVFGLLQGWRGGSLLLQWAEPLGAMILCVLLVAAPFVSTTLIGFLLLACAGYWIL LSLSDLPLGRVTGIHLLVALYGGIAAIATVLSPVKGAALSGLVQLLLYMIFFAFCARVLRSPKILAAVIWVYLMVSLVVS GYGIRQEFFGVEQLATWNDPLSEFANDTRVYSYLGNPNLLAGYLLGAIAFSGVAMLIWRTKIQKTLAAVMFVTNAACLFF TDSRGGWLAMVGAAIVGGLLLYSWYGDRLSPFWRKWLLPLCFGFGAGLLLIAVLGVDAIRLRLLSIFSWRGDSSNNFRIN VWLAVLRMIGDRPLLGIGPGHDAFNAVYPQYMESRFSALSAYSIFLETAVETGLLGLTTFVWLLINIFSQALQSLKDFQS QHKIEGLWLVGAIAAMTGLLIQGLFDTVWYRPQVNTLWWLMVGIIAAQIPPCQPTGRDNPSP
Sequences:
>Translated_462_residues MAAVWQQILFLRFPFEPWLRASVSYRVFGLLQGWRGGSLLLQWAEPLGAMILCVLLVAAPFVSTTLIGFLLLACAGYWIL LSLSDLPLGRVTGIHLLVALYGGIAAIATVLSPVKGAALSGLVQLLLYMIFFAFCARVLRSPKILAAVIWVYLMVSLVVS GYGIRQEFFGVEQLATWNDPLSEFANDTRVYSYLGNPNLLAGYLLGAIAFSGVAMLIWRTKIQKTLAAVMFVTNAACLFF TDSRGGWLAMVGAAIVGGLLLYSWYGDRLSPFWRKWLLPLCFGFGAGLLLIAVLGVDAIRLRLLSIFSWRGDSSNNFRIN VWLAVLRMIGDRPLLGIGPGHDAFNAVYPQYMESRFSALSAYSIFLETAVETGLLGLTTFVWLLINIFSQALQSLKDFQS QHKIEGLWLVGAIAAMTGLLIQGLFDTVWYRPQVNTLWWLMVGIIAAQIPPCQPTGRDNPSP >Mature_461_residues AAVWQQILFLRFPFEPWLRASVSYRVFGLLQGWRGGSLLLQWAEPLGAMILCVLLVAAPFVSTTLIGFLLLACAGYWILL SLSDLPLGRVTGIHLLVALYGGIAAIATVLSPVKGAALSGLVQLLLYMIFFAFCARVLRSPKILAAVIWVYLMVSLVVSG YGIRQEFFGVEQLATWNDPLSEFANDTRVYSYLGNPNLLAGYLLGAIAFSGVAMLIWRTKIQKTLAAVMFVTNAACLFFT DSRGGWLAMVGAAIVGGLLLYSWYGDRLSPFWRKWLLPLCFGFGAGLLLIAVLGVDAIRLRLLSIFSWRGDSSNNFRINV WLAVLRMIGDRPLLGIGPGHDAFNAVYPQYMESRFSALSAYSIFLETAVETGLLGLTTFVWLLINIFSQALQSLKDFQSQ HKIEGLWLVGAIAAMTGLLIQGLFDTVWYRPQVNTLWWLMVGIIAAQIPPCQPTGRDNPSP
Specific function: Unknown
COG id: COG3307
COG function: function code M; Lipid A core - O-antigen ligase and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50908; Mature: 50777
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: PS00027 HOMEOBOX_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAVWQQILFLRFPFEPWLRASVSYRVFGLLQGWRGGSLLLQWAEPLGAMILCVLLVAAP CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH FVSTTLIGFLLLACAGYWILLSLSDLPLGRVTGIHLLVALYGGIAAIATVLSPVKGAALS HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH GLVQLLLYMIFFAFCARVLRSPKILAAVIWVYLMVSLVVSGYGIRQEFFGVEQLATWNDP HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCH LSEFANDTRVYSYLGNPNLLAGYLLGAIAFSGVAMLIWRTKIQKTLAAVMFVTNAACLFF HHHHCCCCEEEHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE TDSRGGWLAMVGAAIVGGLLLYSWYGDRLSPFWRKWLLPLCFGFGAGLLLIAVLGVDAIR ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRLLSIFSWRGDSSNNFRINVWLAVLRMIGDRPLLGIGPGHDAFNAVYPQYMESRFSALS HHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHH AYSIFLETAVETGLLGLTTFVWLLINIFSQALQSLKDFQSQHKIEGLWLVGAIAAMTGLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH IQGLFDTVWYRPQVNTLWWLMVGIIAAQIPPCQPTGRDNPSP HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure AAVWQQILFLRFPFEPWLRASVSYRVFGLLQGWRGGSLLLQWAEPLGAMILCVLLVAAP HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH FVSTTLIGFLLLACAGYWILLSLSDLPLGRVTGIHLLVALYGGIAAIATVLSPVKGAALS HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH GLVQLLLYMIFFAFCARVLRSPKILAAVIWVYLMVSLVVSGYGIRQEFFGVEQLATWNDP HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCH LSEFANDTRVYSYLGNPNLLAGYLLGAIAFSGVAMLIWRTKIQKTLAAVMFVTNAACLFF HHHHCCCCEEEHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE TDSRGGWLAMVGAAIVGGLLLYSWYGDRLSPFWRKWLLPLCFGFGAGLLLIAVLGVDAIR ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRLLSIFSWRGDSSNNFRINVWLAVLRMIGDRPLLGIGPGHDAFNAVYPQYMESRFSALS HHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHH AYSIFLETAVETGLLGLTTFVWLLINIFSQALQSLKDFQSQHKIEGLWLVGAIAAMTGLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH IQGLFDTVWYRPQVNTLWWLMVGIIAAQIPPCQPTGRDNPSP HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA