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The map label for this gene is rbn [C]

Identifier: 170026393

GI number: 170026393

Start: 4617323

End: 4618207

Strand: Reverse

Name: rbn [C]

Synonym: YPK_4186

Alternate gene names: 170026393

Gene position: 4618207-4617323 (Counterclockwise)

Preceding gene: 170026394

Following gene: 170026392

Centisome position: 98.48

GC content: 47.68

Gene sequence:

>885_bases
ATGGCAAGTTTCCGGCGTTTTCGCTTACTTTCCCCCTTAAAACCCTGTGTCACTTTTGGGCGGATGCTATACACCCGAAT
TGATAAAGATGGTCTGACGATGCTGGCCGGGCATTTGGCCTATGTTTCGTTGCTCTCTTTGGTCCCCTTGATTACGGTGA
TTTTTGCGTTATTCGCTGCTTTCCCGATGTTTGCTGAGATCAGCATAAAGTTAAAAGCCTTTATATTTGCTAACTTTATG
CCTGCCACGGGTGACATCATCCAAAATTATCTTGAGCAGTTTGTCGCCAACTCCAATCGTATGACCGTGGTAGGCACCTG
TGGTCTGATCGTCACCGCGTTATTACTGATTTACTCCGTCGATAGTGTGCTCAATATTATTTGGCGCAGTAAAATTCAGC
GCTCACTGGTCTTTTCATTTGCAGTTTATTGGATGGTATTGACGCTGGGGCCGATCCTGGTGGGGGCCAGCATGGTTATC
AGTTCGTATTTACTGTCACTACACTGGCTGGCACACGCCAGGGTAGATAGCATGATCGATGAGATATTACGGGTATTTCC
GTTATTGATCTCCTGGGTTTCTTTTTGGCTATTGTATAGCGTGGTGCCCACGGTACGGGTGCCTGCTCGAGATGCGCTTA
TCGGCGCACTGGTAGCTGCATTACTCTTTGAGTTGGGTAAGAAAGGGTTCGCGATGTATATCACGCTGTTTCCCTCTTAT
CAGTTGATTTATGGGGTATTAGCGGTCATTCCCATTTTATTCCTCTGGGTGTACTGGAGTTGGTGCATTGTGTTATTAGG
TGCGGAAATCACCGTGACATTGGGTGAATACCGCGCCGAGCGCCATCACGCGAAGAACGTCATCACCCAGAGTCCGGAGA
TGTAA

Upstream 100 bases:

>100_bases
ATAATTTCGTGCTCTAATCATTAATGGGTTAGCCTTAGTCGTGCTAACCCTTATCACGCTGGCCCACCCCGAGCTTTATC
GTGTTGACAGAGAGACGAAT

Downstream 100 bases:

>100_bases
GGCATTATGATTGCGTTGATTCAACGGGCGCTCAGCGCCAGTGTCGTGGTCGAAGGGAATATCGTGGGTGAAATTGGCCC
TGGCCTACTGGTATTACTCG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSLLSLVPLITVIFALFAAFPMFAEISIKLKAFIFANFM
PATGDIIQNYLEQFVANSNRMTVVGTCGLIVTALLLIYSVDSVLNIIWRSKIQRSLVFSFAVYWMVLTLGPILVGASMVI
SSYLLSLHWLAHARVDSMIDEILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAALLFELGKKGFAMYITLFPSY
QLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAERHHAKNVITQSPEM

Sequences:

>Translated_294_residues
MASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSLLSLVPLITVIFALFAAFPMFAEISIKLKAFIFANFM
PATGDIIQNYLEQFVANSNRMTVVGTCGLIVTALLLIYSVDSVLNIIWRSKIQRSLVFSFAVYWMVLTLGPILVGASMVI
SSYLLSLHWLAHARVDSMIDEILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAALLFELGKKGFAMYITLFPSY
QLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAERHHAKNVITQSPEM
>Mature_293_residues
ASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSLLSLVPLITVIFALFAAFPMFAEISIKLKAFIFANFMP
ATGDIIQNYLEQFVANSNRMTVVGTCGLIVTALLLIYSVDSVLNIIWRSKIQRSLVFSFAVYWMVLTLGPILVGASMVIS
SYLLSLHWLAHARVDSMIDEILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAALLFELGKKGFAMYITLFPSYQ
LIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAERHHAKNVITQSPEM

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=279, Percent_Identity=69.8924731182796, Blast_Score=415, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 33129; Mature: 32998

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSLLSLVPLITVIFALFAA
CCCCHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPMFAEISIKLKAFIFANFMPATGDIIQNYLEQFVANSNRMTVVGTCGLIVTALLLIYSV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHH
DSVLNIIWRSKIQRSLVFSFAVYWMVLTLGPILVGASMVISSYLLSLHWLAHARVDSMID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAALLFELGKKGFAMYITLFPSY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCH
QLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAERHHAKNVITQSPEM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSLLSLVPLITVIFALFAA
CCCHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPMFAEISIKLKAFIFANFMPATGDIIQNYLEQFVANSNRMTVVGTCGLIVTALLLIYSV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHH
DSVLNIIWRSKIQRSLVFSFAVYWMVLTLGPILVGASMVISSYLLSLHWLAHARVDSMID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAALLFELGKKGFAMYITLFPSY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCH
QLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAERHHAKNVITQSPEM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA