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The map label for this gene is tonB [H]

Identifier: 170026289

GI number: 170026289

Start: 4506446

End: 4507249

Strand: Reverse

Name: tonB [H]

Synonym: YPK_4082

Alternate gene names: 170026289

Gene position: 4507249-4506446 (Counterclockwise)

Preceding gene: 170026290

Following gene: 170026286

Centisome position: 96.11

GC content: 47.26

Gene sequence:

>804_bases
ATGAATAGATTACAGCAGAGCAGTGACAAACTTATATTTTGGCTAGTCGGGGCCTTATTAGCGTGTGGTATCCATATTTA
TGCACTTTGGTGGCTGAGTACCGCATCTATACCAGCAATACCCACCAGCTACCCCGCCGCAATAATGATGGAGCTTTCAG
CCGAACCGGAATTTATGCAAAACTTGCCACAAAACTCAGTGGTGGGCATAACGCAGAATATTATCGAGCCTGCGGTTGAG
CAACGGGTCAACCAGCCGGATGACATTGTCGATTTACCTACGCTGCCTGAACAACCAGAGGGGCAACGGGAGATTACGAG
AAAAGAGCCAATAAAGGTCAAACGGCCAGCTGAAAATAGAGCGACATCGCGTAAACCGGTTAATAAAGAAACACAAGAAA
GTGACAGTAAACAATCCTCACCAGCCGCTGCAGCCAGTGCAATGCTTTCAGGGACGAGCCAACAAGTTGCCGCAGCGGTA
AACAGTGACTCATCCCACCGTCAGCAAGCTCAAGTGAGTTGGAAAAGTCGTTTACAGGGGCATTTAATGGGGTTTAAGCG
TTACCCATCCAGTGCCAGAAAACAGCAACAGCAAGGGACTGCCATGATTCGATTTGTAGTCGATAAAAATGGTTATGTGT
CATCAGTGCAACTGAGTCACAGTAGTGGTACATCCGCTTTAGATCGCGAGGCGTTAGCGATTATCAAGCGCGCTCAGCCA
TTACCGAAACCGCCTGCTGAGTTGTTATCGCAGGGGCAGATAACATTATCTCTGCCCGTTGATTTTAATCTAAAAAGGAA
ATAA

Upstream 100 bases:

>100_bases
ACTGATCGCCTGCACCTCGCGTTAGCCGAGGAATAAAATATCTCGGTTAAGTCATTGGAAATAAAACATTAAAAATAAAG
GAATATAATGATTTCTTATC

Downstream 100 bases:

>100_bases
TACGGGCAATCGCAGTGGGTAACATATGAGTAGAGCGCAAAGTACGCAAAATAAGAGAGGGGAGAACGGGGGATTAAAAA
CCGGGCGCCGTGCCCGGTTT

Product: TonB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MNRLQQSSDKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVE
QRVNQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAV
NSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSHSSGTSALDREALAIIKRAQP
LPKPPAELLSQGQITLSLPVDFNLKRK

Sequences:

>Translated_267_residues
MNRLQQSSDKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVE
QRVNQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAV
NSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSHSSGTSALDREALAIIKRAQP
LPKPPAELLSQGQITLSLPVDFNLKRK
>Mature_267_residues
MNRLQQSSDKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVE
QRVNQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAV
NSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSHSSGTSALDREALAIIKRAQP
LPKPPAELLSQGQITLSLPVDFNLKRK

Specific function: Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requirin

COG id: COG0810

COG function: function code M; Periplasmic protein TonB, links inner and outer membranes

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein; Periplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006260 [H]

Pfam domain/function: PF03544 TonB [H]

EC number: NA

Molecular weight: Translated: 29388; Mature: 29388

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLQQSSDKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQ
CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEEEECCCCCHHHH
NLPQNSVVGITQNIIEPAVEQRVNQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENR
CCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHCCCCEEECCCHHC
ATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAVNSDSSHRQQAQVSWKSRLQG
CCCCCCCCCHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
HLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSHSSGTSALDREALAIIKRAQP
HHHHHHHCCCHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC
LPKPPAELLSQGQITLSLPVDFNLKRK
CCCCHHHHHCCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MNRLQQSSDKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQ
CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEEEECCCCCHHHH
NLPQNSVVGITQNIIEPAVEQRVNQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENR
CCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHCCCCEEECCCHHC
ATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAVNSDSSHRQQAQVSWKSRLQG
CCCCCCCCCHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
HLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSHSSGTSALDREALAIIKRAQP
HHHHHHHCCCHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC
LPKPPAELLSQGQITLSLPVDFNLKRK
CCCCHHHHHCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]