Click here to switch to the map view.

The map label for this gene is rfaH [H]

Identifier: 170026148

GI number: 170026148

Start: 4344444

End: 4344929

Strand: Direct

Name: rfaH [H]

Synonym: YPK_3937

Alternate gene names: 170026148

Gene position: 4344444-4344929 (Clockwise)

Preceding gene: 170026145

Following gene: 170026162

Centisome position: 92.64

GC content: 44.03

Gene sequence:

>486_bases
ATGAAATCTTGGTATTTATTGTATTGTAAACGCGGTCAGATTTTACGTGCCAAAGAGCATTTGGAACGGCAAACTGTAAA
CTGTTGGACACCAATAGTGGCTATCGAAAAGATAGTTCGAGGGAAACGTATTGAGGTAATAGAGGCTCTATTCCCCAATT
ATTTATTCGCTGAGTTTGACCCGGAAAATATCCATACCACAACCGTCAGCGCCACCCGGGGGGTCAGCCATTTTGTTCGT
TTTGGTACACAGCCCGCGGTGATCCCAGCAACCGTCATTGCTGATATGCAAGCCCATGCTGTGGATAAGATAATTGCCCC
TGAAGTACCGAAACCTGGTGATATCGTAAAAATTATTGATGGCGTTTTTGCCGGATTACAGGCTATTTATACCGAACCAG
ATGGTGAAGCCCGCTCGATGTTGTTACTGAATATGCTCAATAGCCAAATTAAGCATAGCCTGGACAATCGTCAGTTCGAA
AAGTAA

Upstream 100 bases:

>100_bases
CAAAATAATCTGTATATTGGAAGTGATCCATTTTTCCTCACTATATCTCGCTCACTGCTTTTGTTATGCTGCTAAATAGT
ACCCAAAGGTATGTGAAACT

Downstream 100 bases:

>100_bases
TAACACGCTGACTTACAATAATCTGGATGAGTATTACCTCATCATTATAGAATTCATTCAGATAGGCGCAGTTAGTGCCT
ATCTGAATGCTGTGACTCTT

Product: transcriptional activator RfaH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MKSWYLLYCKRGQILRAKEHLERQTVNCWTPIVAIEKIVRGKRIEVIEALFPNYLFAEFDPENIHTTTVSATRGVSHFVR
FGTQPAVIPATVIADMQAHAVDKIIAPEVPKPGDIVKIIDGVFAGLQAIYTEPDGEARSMLLLNMLNSQIKHSLDNRQFE
K

Sequences:

>Translated_161_residues
MKSWYLLYCKRGQILRAKEHLERQTVNCWTPIVAIEKIVRGKRIEVIEALFPNYLFAEFDPENIHTTTVSATRGVSHFVR
FGTQPAVIPATVIADMQAHAVDKIIAPEVPKPGDIVKIIDGVFAGLQAIYTEPDGEARSMLLLNMLNSQIKHSLDNRQFE
K
>Mature_161_residues
MKSWYLLYCKRGQILRAKEHLERQTVNCWTPIVAIEKIVRGKRIEVIEALFPNYLFAEFDPENIHTTTVSATRGVSHFVR
FGTQPAVIPATVIADMQAHAVDKIIAPEVPKPGDIVKIIDGVFAGLQAIYTEPDGEARSMLLLNMLNSQIKHSLDNRQFE
K

Specific function: Transcriptional activator of hemolysin synthesis and secretion, also required for expression of sex factor and lipopolysaccharide biosynthesis genes. Transcriptional activator of rfaD/htrM and htrL [H]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790276, Length=161, Percent_Identity=64.5962732919255, Blast_Score=232, Evalue=8e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR010215
- InterPro:   IPR006645
- InterPro:   IPR014722 [H]

Pfam domain/function: PF02357 NusG [H]

EC number: NA

Molecular weight: Translated: 18200; Mature: 18200

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSWYLLYCKRGQILRAKEHLERQTVNCWTPIVAIEKIVRGKRIEVIEALFPNYLFAEFD
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECC
PENIHTTTVSATRGVSHFVRFGTQPAVIPATVIADMQAHAVDKIIAPEVPKPGDIVKIID
CCCCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
GVFAGLQAIYTEPDGEARSMLLLNMLNSQIKHSLDNRQFEK
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKSWYLLYCKRGQILRAKEHLERQTVNCWTPIVAIEKIVRGKRIEVIEALFPNYLFAEFD
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECC
PENIHTTTVSATRGVSHFVRFGTQPAVIPATVIADMQAHAVDKIIAPEVPKPGDIVKIID
CCCCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
GVFAGLQAIYTEPDGEARSMLLLNMLNSQIKHSLDNRQFEK
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]