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The map label for this gene is ssaV [H]

Identifier: 170026120

GI number: 170026120

Start: 4306409

End: 4308457

Strand: Reverse

Name: ssaV [H]

Synonym: YPK_3907

Alternate gene names: 170026120

Gene position: 4308457-4306409 (Counterclockwise)

Preceding gene: 170026121

Following gene: 170026119

Centisome position: 91.88

GC content: 52.07

Gene sequence:

>2049_bases
ATGAGTAAGTCAGCACTGGTGCGGGGTTTGACGATGATCACCGCGCGGCAGGATATTTTTTTAGCGGTCATGTTGCTGGT
GGCGGTCTTTATGATGATCCTGCCACTGCCTACGACGATGGTGGATTTACTGATCGCCATCAATCTTGCCTTCTCCGTCA
TTCTCTTAATGATCTCGATCTATCTGCGCGATCCTTTGGAGTTCTCCGTCTTCCCGTCATTACTGTTGATCACCACCCTT
TATCGATTGGCACTAACGATCAGCACCACGCGACTGGTGCTGTTGCAACATGATGCCGGTGAGATTGTCGAGGCATTCGG
TCAGTTTGTCGTGGGCGGTAATCTGGCCGTCGGGATGATCATTTTTACCATTATCACGGTGGTCCAATTTATCGTGATTA
CCAAAGGTTCAGAGCGGGTTGCTGAGGTCAGTGCGCGCTTCTCACTTGATGGTATGCCGGGTAAGCAGATGAGCATCGAC
GGTGACATGCGTGCGGGTGCGATCGATTCGGTCGAAGCTAAACGGCTACGGGAGCGGGTACAAAAAGAGAGCCGCTTATT
TGGTGCTATGGACGGTGCCATGAAGTTTGTTAAAGGGGATGCCATCGCTGGGATCATTGTCATTCTGGTCAATATCATTG
GCGGTATCACTATTGGTGTGATGCAACACAAGATGTCCGCGGAAGAGGCGATGAATACCTACGCGGTATTATCGATAGGC
GATGGATTGTGCGCCCAAATCCCTTCATTACTGATCTCGATTACCGCCGGGATTATTGTTACCCGGGTTCCTGGCAGCAA
CAAACAGAGTCTGGCGAATGAGTTGGCGGTGCAGGTGGGGCGTCAACCGGATGCGCTGTGGTTAGCTGCCGCTATTCTGA
CGGTGTTCGCCCTGTTACCCGGCTTCCCGTTCCTGATCTTTATCACTTTGGCGGCCGCGGTTGCGGCTCCGGCTTTTTTA
CTTTATCGGAAGAACCGGCGGATATCGCAGGATGGTCGCGCAAATGGAGGCGGTGAAGAGGGGGCGGCCACGGGGCAGCG
TATGACGCCTGGTGCCGTACCGCTGATGCTGCACTGTGCATCAAATTTACATCACCCGCATTTAGGGCGCGATATTGATG
GCCTACGCTGGCGCTGGTTTGAGCATCTCGGTGTGCCATTGCCTGAGGTGGAGATCCGCTGTGATCCTACATTGGCAGAA
AATACCTTATCGGTGCAGGTGTATCAGGAGCGGGTGCTGGAGGTTGTGTTACCGCCCGACAGCTTGTTACTGACACGGCC
TTGCTCATCGTTAGTAACGAACAATCAGGTATTGGGCGCGAAGATGGGGTCATTTGATTGGCTGGATGCTAAACAGGCTA
TGCAAGCCAGAACCTTGGGTATCCCTTACGTGGAGGGGCATCAGCGGATCATCACCTGTCTGACCAGGGTGTTTGAACGG
TACACCGCCGAATTTATCGGCGTACAGGAGACTCGCTACCTGATGGATGCCATGGAAGGGCGCTATGGTGAGTTAGTGAA
AGAGCTACAACGGCAGATACCCGTCGGTAAAGTGGCTGAAATATTACAACGGCTGGTTGAGGAAAATATTTCCATTCGCG
ATTTACGGACTATTTTCGGCGCGTTGGTGGTTTGGGCACCGAAAGAAAAAGATATCGTGATGCTCACCGAATATGTCCGT
ATCGCCTTGCGCCGTCATTTGTGCCGTCGCTTTAGTCACAATAAAACCTGGATATCAGTATTACGCCTCGGTGATGGGGT
GGAGCATCTGATCCGCGACTCTATCCGCCAGACATCATCAGGCACTTACTCCGCACTGGAGGAGAGGCGATCCCTCTTGA
TCCTCAACAAAATAAAAAACGCATTTGCTGAAAACCAGGATGCGGTATTGCTTACCACCCTCGATGTTCGTCGCTTTGTC
CGCAAAATTATTGAGCGGGATCTCTTCGTGCTACCGGTACTTTCCTGGCAGGAACTGGGCGATGAAATGAATCTCAAGGT
GGCGGGCACCATTGAACTGATTGGCGATGAACTTGATGAAACTGCCTGA

Upstream 100 bases:

>100_bases
TCTCCAATGCTGCAACTTACGCTTTCTCTCCACCACCATTTATCTCAACTGGTTCTGTGGCTACAGCAGTCGCCAGATCT
TTTCGACGAAGAGAATGTTT

Downstream 100 bases:

>100_bases
TATCGCGCGGTTAACCCCCCGCCTGCAACAACAACTCACGCGACCGTCGGCACCACCGGAGGGCTTGCGTTACCGTGGGC
CGATTGTGGAGATTGGGCCG

Product: secretion system apparatus protein SsaV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 682; Mature: 681

Protein sequence:

>682_residues
MSKSALVRGLTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSLLLITTL
YRLALTISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMIIFTIITVVQFIVITKGSERVAEVSARFSLDGMPGKQMSID
GDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAIAGIIVILVNIIGGITIGVMQHKMSAEEAMNTYAVLSIG
DGLCAQIPSLLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLAAAVAAPAFL
LYRKNRRISQDGRANGGGEEGAATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAE
NTLSVQVYQERVLEVVLPPDSLLLTRPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER
YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVR
IALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERRSLLILNKIKNAFAENQDAVLLTTLDVRRFV
RKIIERDLFVLPVLSWQELGDEMNLKVAGTIELIGDELDETA

Sequences:

>Translated_682_residues
MSKSALVRGLTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSLLLITTL
YRLALTISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMIIFTIITVVQFIVITKGSERVAEVSARFSLDGMPGKQMSID
GDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAIAGIIVILVNIIGGITIGVMQHKMSAEEAMNTYAVLSIG
DGLCAQIPSLLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLAAAVAAPAFL
LYRKNRRISQDGRANGGGEEGAATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAE
NTLSVQVYQERVLEVVLPPDSLLLTRPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER
YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVR
IALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERRSLLILNKIKNAFAENQDAVLLTTLDVRRFV
RKIIERDLFVLPVLSWQELGDEMNLKVAGTIELIGDELDETA
>Mature_681_residues
SKSALVRGLTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSLLLITTLY
RLALTISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMIIFTIITVVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDG
DMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAIAGIIVILVNIIGGITIGVMQHKMSAEEAMNTYAVLSIGD
GLCAQIPSLLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLAAAVAAPAFLL
YRKNRRISQDGRANGGGEEGAATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAEN
TLSVQVYQERVLEVVLPPDSLLLTRPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERY
TAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRI
ALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERRSLLILNKIKNAFAENQDAVLLTTLDVRRFVR
KIIERDLFVLPVLSWQELGDEMNLKVAGTIELIGDELDETA

Specific function: Required For Formation Of The Rod Structure Of The Flagellar Apparatus. Together With Flii And Flih, May Constitute The Export Apparatus Of Flagellin. [C]

COG id: COG4789

COG function: function code U; Type III secretory pathway, component EscV

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family [H]

Homologues:

Organism=Escherichia coli, GI1788187, Length=686, Percent_Identity=34.1107871720117, Blast_Score=349, Evalue=3e-97,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001712
- InterPro:   IPR006302 [H]

Pfam domain/function: PF00771 FHIPEP [H]

EC number: NA

Molecular weight: Translated: 75503; Mature: 75372

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS00994 FHIPEP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSALVRGLTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
YLRDPLEFSVFPSLLLITTLYRLALTISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMI
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHCCCCHHHHHH
IFTIITVVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERV
HHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
QKESRLFGAMDGAMKFVKGDAIAGIIVILVNIIGGITIGVMQHKMSAEEAMNTYAVLSIG
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
DGLCAQIPSLLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLP
CCHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
GFPFLIFITLAAAVAAPAFLLYRKNRRISQDGRANGGGEEGAATGQRMTPGAVPLMLHCA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
SNLHHPHLGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPD
HCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHEECCCC
SLLLTRPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER
CCEEECCHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFG
HHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHH
ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSS
HHHEECCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCC
GTYSALEERRSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELG
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCEEEEECCCHHHCC
DEMNLKVAGTIELIGDELDETA
CCCCEEEEEEHHHHCCHHCCCC
>Mature Secondary Structure 
SKSALVRGLTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
YLRDPLEFSVFPSLLLITTLYRLALTISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMI
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHCCCCHHHHHH
IFTIITVVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERV
HHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
QKESRLFGAMDGAMKFVKGDAIAGIIVILVNIIGGITIGVMQHKMSAEEAMNTYAVLSIG
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
DGLCAQIPSLLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLP
CCHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
GFPFLIFITLAAAVAAPAFLLYRKNRRISQDGRANGGGEEGAATGQRMTPGAVPLMLHCA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
SNLHHPHLGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPD
HCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHEECCCC
SLLLTRPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER
CCEEECCHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFG
HHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHH
ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSS
HHHEECCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCC
GTYSALEERRSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELG
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCEEEEECCCHHHCC
DEMNLKVAGTIELIGDELDETA
CCCCEEEEEEHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]