| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
Click here to switch to the map view.
The map label for this gene is 170025528
Identifier: 170025528
GI number: 170025528
Start: 3625588
End: 3627441
Strand: Reverse
Name: 170025528
Synonym: YPK_3311
Alternate gene names: NA
Gene position: 3627441-3625588 (Counterclockwise)
Preceding gene: 170025529
Following gene: 170025527
Centisome position: 77.35
GC content: 45.25
Gene sequence:
>1854_bases ATGGCGGATAAATCAGTTGAATTAACGCCCGTGGTAGAGGCACCCGTTGCGTTTTCATTGCCTTACTTTGAGTTTTTGGT CTGTACCCGGCGTTATGAAGATGCGGGTAGATTATTGATACTGATGTTGGAGAAGCTAGATACTCAATATGGGCGCTGGG ATGTTTTTTCTCTGAATAAAGAGCCAATACAGCAACAAGAGTATTATTGTAATCGGCTAGCCGCCGCTATCGGATGCTTA TTTTCTGATCCCGGATTTGTGATTTCGGAAACAGGTTTCCTTCAGCTAATCAATTTCCACCGTTGGATTGCGTTGATTTT TGCAGCATCGACTTTTGGTCATGCTGATCATGTGATCACTAACCTTAATGAAGCCGGAGAAGGGTGCTCGCACCCATTGC GATTCGAGCGAAATAACTTCCTTAAATTTTGTGTGATGTATTTACCCGAATCAGGTATTCCGCTGCAACCGGATATATTA TGGCAATTTAATCCGCAGGCAACAGCCGCATTATTTCTGGCGTTATTATCTCCCCGAATTTTACCGAGTGCGGCGGGGCA TGAAAAGCGTGAGACTTTATTGGCGTGGTTACCTGAAAAACTCTTAACACTGATCAGTCTTGAGGGGTTACCTGAGCGTA TTTTGCATGATGTGTATATGCATTGCAGTTATGCCGACATGGCGAAAAAACACACCATAAAGCGGAGTATTAATTTTCAT TTACGTAAAACCATGCTCAAAAATGGATTATCTGATATGAATGAACTGCCACCATTGCGTAGCAAACCATTGATGTTAGT GATTTTAGAGTGGTTTAACAGTGGTCATTCTATCTATCGAACGCACTCCAGTACTCTGCGGGCGGCCCGTGATCAGTTTT CGACTCATGGTGTTGCGATTGCAGAGGCAACAGATGATATTACCCGAAAAGTATTTGATGATTTCACTGAGGTTAGCCGA ACGGGGGCGGTCGAAACGATTATGGCGCTGGCACAACAGTTACGCCCGGATGTCATTTATTTTCCCAGTGTGGGGATGTT CCCGATGACGGTGGCGTTGACTAATTTACGGTTGGCCCCCTTGCAGGTGATGGCGTTAGGCCACCCGGCAACCACCCATT CTGACTATATTGATGCGGTGTTGGTGGAGGAAGACTATTTGGGCGATATCGCATGCTTCTCCGAGAAGGTGGTTTCTTTA CCTAAAGATTGCCTACCTTATGTGCCGCCAGCCAATATCACTCAACCGGAACCCATACAGCAATTTGTTCAGCGCGAAGC GGTACATATTGCCGTTTGTGCTTCAGCGATGAAAATTAACCCTCGTTTTTTAGCTGCCTGTGCCGAAATCGCCTTACGAT CCCCGCTACCTATCATATTTCATTTTCTGGTTGGTTTTTGCTGGGGTATAACTCATCGGGTTATGGAAAAAGCGGTTAAT GAGATGGTGACTTCAGCCAAAGTTTATGAACACTTAAATTATCAGAATTATTTACAGGTAATTAATCAGTGCGATCTGTT TATTAATCCGTTTCCTTTCGGCAATACCAATGGCATCGTCGATACGGTGCGGCAGGGGTTGCCTGGTGTTTGTCTGAGTG GGGAGGAAGTCCATGAGCATATTGATGAAGGGTTATTTCGCCGTCTGGGTTTGGCTGAAGAACTGATTACACATAATGTG GAGCAATATATTACGGCGACGGTACGGTTAATTACGGATACAAACTGGCGCAATGGTCTACGCCGTCAGTTGTTACAAAC TCAACCCGATAATGTGCTGTTTACCGGTAAACCCGAGCAATTCGGGCAGATCGTTCGTGCCTTGCTGGATAACGGCCATC AGGATGTGAATTAG
Upstream 100 bases:
>100_bases AACTCGAGTTATTTTGGGTATATTAATTTAATACTATTAATGATACAGCGGGGCTTGGCTAAATAGAGGGCAAGCCCTGA GCTGATAGGGAGATCGGGTA
Downstream 100 bases:
>100_bases TATGCTGAAATGGCAGGCCACAACTGCATGTGAGGATCCCGCGGAGGGGGAAGAACTTCATCGCTTGGTTGCCGATATCC CGATCGGCATTTTACAGCAC
Product: putative accessory processing protein
Products: NA
Alternate protein names: Adhesin Processing HmwC-Like Protein; O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide Repeat Domain Protein; Adhesin Processing Protein; TPR Repeat-Containing Protein; TPR Domain-Containing Protein; Glycosyltransferase
Number of amino acids: Translated: 617; Mature: 616
Protein sequence:
>617_residues MADKSVELTPVVEAPVAFSLPYFEFLVCTRRYEDAGRLLILMLEKLDTQYGRWDVFSLNKEPIQQQEYYCNRLAAAIGCL FSDPGFVISETGFLQLINFHRWIALIFAASTFGHADHVITNLNEAGEGCSHPLRFERNNFLKFCVMYLPESGIPLQPDIL WQFNPQATAALFLALLSPRILPSAAGHEKRETLLAWLPEKLLTLISLEGLPERILHDVYMHCSYADMAKKHTIKRSINFH LRKTMLKNGLSDMNELPPLRSKPLMLVILEWFNSGHSIYRTHSSTLRAARDQFSTHGVAIAEATDDITRKVFDDFTEVSR TGAVETIMALAQQLRPDVIYFPSVGMFPMTVALTNLRLAPLQVMALGHPATTHSDYIDAVLVEEDYLGDIACFSEKVVSL PKDCLPYVPPANITQPEPIQQFVQREAVHIAVCASAMKINPRFLAACAEIALRSPLPIIFHFLVGFCWGITHRVMEKAVN EMVTSAKVYEHLNYQNYLQVINQCDLFINPFPFGNTNGIVDTVRQGLPGVCLSGEEVHEHIDEGLFRRLGLAEELITHNV EQYITATVRLITDTNWRNGLRRQLLQTQPDNVLFTGKPEQFGQIVRALLDNGHQDVN
Sequences:
>Translated_617_residues MADKSVELTPVVEAPVAFSLPYFEFLVCTRRYEDAGRLLILMLEKLDTQYGRWDVFSLNKEPIQQQEYYCNRLAAAIGCL FSDPGFVISETGFLQLINFHRWIALIFAASTFGHADHVITNLNEAGEGCSHPLRFERNNFLKFCVMYLPESGIPLQPDIL WQFNPQATAALFLALLSPRILPSAAGHEKRETLLAWLPEKLLTLISLEGLPERILHDVYMHCSYADMAKKHTIKRSINFH LRKTMLKNGLSDMNELPPLRSKPLMLVILEWFNSGHSIYRTHSSTLRAARDQFSTHGVAIAEATDDITRKVFDDFTEVSR TGAVETIMALAQQLRPDVIYFPSVGMFPMTVALTNLRLAPLQVMALGHPATTHSDYIDAVLVEEDYLGDIACFSEKVVSL PKDCLPYVPPANITQPEPIQQFVQREAVHIAVCASAMKINPRFLAACAEIALRSPLPIIFHFLVGFCWGITHRVMEKAVN EMVTSAKVYEHLNYQNYLQVINQCDLFINPFPFGNTNGIVDTVRQGLPGVCLSGEEVHEHIDEGLFRRLGLAEELITHNV EQYITATVRLITDTNWRNGLRRQLLQTQPDNVLFTGKPEQFGQIVRALLDNGHQDVN >Mature_616_residues ADKSVELTPVVEAPVAFSLPYFEFLVCTRRYEDAGRLLILMLEKLDTQYGRWDVFSLNKEPIQQQEYYCNRLAAAIGCLF SDPGFVISETGFLQLINFHRWIALIFAASTFGHADHVITNLNEAGEGCSHPLRFERNNFLKFCVMYLPESGIPLQPDILW QFNPQATAALFLALLSPRILPSAAGHEKRETLLAWLPEKLLTLISLEGLPERILHDVYMHCSYADMAKKHTIKRSINFHL RKTMLKNGLSDMNELPPLRSKPLMLVILEWFNSGHSIYRTHSSTLRAARDQFSTHGVAIAEATDDITRKVFDDFTEVSRT GAVETIMALAQQLRPDVIYFPSVGMFPMTVALTNLRLAPLQVMALGHPATTHSDYIDAVLVEEDYLGDIACFSEKVVSLP KDCLPYVPPANITQPEPIQQFVQREAVHIAVCASAMKINPRFLAACAEIALRSPLPIIFHFLVGFCWGITHRVMEKAVNE MVTSAKVYEHLNYQNYLQVINQCDLFINPFPFGNTNGIVDTVRQGLPGVCLSGEEVHEHIDEGLFRRLGLAEELITHNVE QYITATVRLITDTNWRNGLRRQLLQTQPDNVLFTGKPEQFGQIVRALLDNGHQDVN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69690; Mature: 69559
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADKSVELTPVVEAPVAFSLPYFEFLVCTRRYEDAGRLLILMLEKLDTQYGRWDVFSLNK CCCCCCEECEEECCCCHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEECCC EPIQQQEYYCNRLAAAIGCLFSDPGFVISETGFLQLINFHRWIALIFAASTFGHADHVIT CHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH NLNEAGEGCSHPLRFERNNFLKFCVMYLPESGIPLQPDILWQFNPQATAALFLALLSPRI CCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCC LPSAAGHEKRETLLAWLPEKLLTLISLEGLPERILHDVYMHCSYADMAKKHTIKRSINFH CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LRKTMLKNGLSDMNELPPLRSKPLMLVILEWFNSGHSIYRTHSSTLRAARDQFSTHGVAI HHHHHHHHCHHHHHHCCCCCCCCHHHHEEHHHCCCCCEEEEHHHHHHHHHHHHHHCCEEE AEATDDITRKVFDDFTEVSRTGAVETIMALAQQLRPDVIYFPSVGMFPMTVALTNLRLAP EHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCC LQVMALGHPATTHSDYIDAVLVEEDYLGDIACFSEKVVSLPKDCLPYVPPANITQPEPIQ EEEEEECCCCCCCCHHHHEEEECCHHCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHH QFVQREAVHIAVCASAMKINPRFLAACAEIALRSPLPIIFHFLVGFCWGITHRVMEKAVN HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH EMVTSAKVYEHLNYQNYLQVINQCDLFINPFPFGNTNGIVDTVRQGLPGVCLSGEEVHEH HHHHHHHHHHHCCHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHH IDEGLFRRLGLAEELITHNVEQYITATVRLITDTNWRNGLRRQLLQTQPDNVLFTGKPEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHCCCCCEEEECCCHH FGQIVRALLDNGHQDVN HHHHHHHHHHCCCCCCC >Mature Secondary Structure ADKSVELTPVVEAPVAFSLPYFEFLVCTRRYEDAGRLLILMLEKLDTQYGRWDVFSLNK CCCCCEECEEECCCCHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEECCC EPIQQQEYYCNRLAAAIGCLFSDPGFVISETGFLQLINFHRWIALIFAASTFGHADHVIT CHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH NLNEAGEGCSHPLRFERNNFLKFCVMYLPESGIPLQPDILWQFNPQATAALFLALLSPRI CCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCC LPSAAGHEKRETLLAWLPEKLLTLISLEGLPERILHDVYMHCSYADMAKKHTIKRSINFH CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LRKTMLKNGLSDMNELPPLRSKPLMLVILEWFNSGHSIYRTHSSTLRAARDQFSTHGVAI HHHHHHHHCHHHHHHCCCCCCCCHHHHEEHHHCCCCCEEEEHHHHHHHHHHHHHHCCEEE AEATDDITRKVFDDFTEVSRTGAVETIMALAQQLRPDVIYFPSVGMFPMTVALTNLRLAP EHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCC LQVMALGHPATTHSDYIDAVLVEEDYLGDIACFSEKVVSLPKDCLPYVPPANITQPEPIQ EEEEEECCCCCCCCHHHHEEEECCHHCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHH QFVQREAVHIAVCASAMKINPRFLAACAEIALRSPLPIIFHFLVGFCWGITHRVMEKAVN HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH EMVTSAKVYEHLNYQNYLQVINQCDLFINPFPFGNTNGIVDTVRQGLPGVCLSGEEVHEH HHHHHHHHHHHCCHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHH IDEGLFRRLGLAEELITHNVEQYITATVRLITDTNWRNGLRRQLLQTQPDNVLFTGKPEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHCCCCCEEEECCCHH FGQIVRALLDNGHQDVN HHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA