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The map label for this gene is ybaV [H]

Identifier: 170025446

GI number: 170025446

Start: 3530497

End: 3530943

Strand: Reverse

Name: ybaV [H]

Synonym: YPK_3229

Alternate gene names: 170025446

Gene position: 3530943-3530497 (Counterclockwise)

Preceding gene: 170025447

Following gene: 170025445

Centisome position: 75.3

GC content: 42.95

Gene sequence:

>447_bases
ATGAAATTTTTAGGAAAATTATTCGCCATAACCGTATTACTAACGGGTCTCAATATTCATTCTTTCGCTTATGCGGCCCC
TGCCGCTTCCACAGATAATACGCAGGATAAAGTCTCAAAAAAGTCGCCTAATATCGCCGCAGATAACGGCGCTAAAGTAA
AAGGTACGCCAGCACAGTCGGTAGAGAAGATAAGTGATAACACTAAAAATGTAGCAGCAGATTCCTCGGTTAACGCATCA
GACAACCAACAACACCAGATCAATATTAATAGCGCTAATGCTGAACAGTTAGCGCAGTTCTTGAATGGTATTGGCAGAAA
AAAGGCGGAAGCGATCATTACCTATCGTGAACAGTCGGGGCCATTCACACATGTGGATCAATTACTCGAAGTTCCTGGCC
TTGGTCCCTCTTTCTTGGAGCGAAATAACGGCAAGATTAAATTGTGA

Upstream 100 bases:

>100_bases
GTCGCTTTGGCGACCTTTCGCATATCTGTGATCTGCCCTTTGCGTTGAGCCAAGGGGTACGGCAAGGTAGCCATGCTGTC
AAACACAAGGAGGATACAGC

Downstream 100 bases:

>100_bases
TGCTCTTGTTGTAAGGGAACCCCCTGATGCTTCCTGGTGAGTTTCATAGGAGCCAAAGCGGTATCTGGATTATAAAAGTG
GTATATGGATTATAAATAGA

Product: helix-hairpin-helix repeat-containing competence protein ComEA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MKFLGKLFAITVLLTGLNIHSFAYAAPAASTDNTQDKVSKKSPNIAADNGAKVKGTPAQSVEKISDNTKNVAADSSVNAS
DNQQHQININSANAEQLAQFLNGIGRKKAEAIITYREQSGPFTHVDQLLEVPGLGPSFLERNNGKIKL

Sequences:

>Translated_148_residues
MKFLGKLFAITVLLTGLNIHSFAYAAPAASTDNTQDKVSKKSPNIAADNGAKVKGTPAQSVEKISDNTKNVAADSSVNAS
DNQQHQININSANAEQLAQFLNGIGRKKAEAIITYREQSGPFTHVDQLLEVPGLGPSFLERNNGKIKL
>Mature_148_residues
MKFLGKLFAITVLLTGLNIHSFAYAAPAASTDNTQDKVSKKSPNIAADNGAKVKGTPAQSVEKISDNTKNVAADSSVNAS
DNQQHQININSANAEQLAQFLNGIGRKKAEAIITYREQSGPFTHVDQLLEVPGLGPSFLERNNGKIKL

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=64, Percent_Identity=53.125, Blast_Score=81, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15805; Mature: 15805

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFLGKLFAITVLLTGLNIHSFAYAAPAASTDNTQDKVSKKSPNIAADNGAKVKGTPAQS
CCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCEECCCCHHH
VEKISDNTKNVAADSSVNASDNQQHQININSANAEQLAQFLNGIGRKKAEAIITYREQSG
HHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCHHHHHHEEEECCCCC
PFTHVDQLLEVPGLGPSFLERNNGKIKL
CHHHHHHHHHCCCCCHHHHHCCCCEEEC
>Mature Secondary Structure
MKFLGKLFAITVLLTGLNIHSFAYAAPAASTDNTQDKVSKKSPNIAADNGAKVKGTPAQS
CCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCEECCCCHHH
VEKISDNTKNVAADSSVNASDNQQHQININSANAEQLAQFLNGIGRKKAEAIITYREQSG
HHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCHHHHHHEEEECCCCC
PFTHVDQLLEVPGLGPSFLERNNGKIKL
CHHHHHHHHHCCCCCHHHHHCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]