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The map label for this gene is ymfK [C]

Identifier: 170025321

GI number: 170025321

Start: 3402788

End: 3403510

Strand: Direct

Name: ymfK [C]

Synonym: YPK_3102

Alternate gene names: 170025321

Gene position: 3402788-3403510 (Clockwise)

Preceding gene: 170025314

Following gene: 170025322

Centisome position: 72.56

GC content: 43.71

Gene sequence:

>723_bases
ATGGAAAAGAGAAAGGAATTGACGACAGAACAGCTAGAAGACGCTAAGCGGCTGAAGGCTTTGTATGAGTCAAAGAAAAA
AACTTTGGGTATTACGCAGTATACTATTGCTGATGATCTTGGCATCTCACAGGGTGCTGTTGGTCATTACCTGAATGGTA
GGAATGCACTTAATGCCCCAATAGCCTCAGTGTTTGCAAAAGCTTTGCAGGTTTCCATCTCTGACTTTAGTCCATCAATT
GCAAGAGAAGTATCTGGGTATGCAGCTTCAAATACTGAAGATCCACAACGTCCAGTGATTCTCGCTTATACATACCCGTT
ATTTTCAACTGTTCAGGCAGGGGCCTTTGCCGCTGTAGGGTCATATACAGAGAAAGATGCAAAAGACTGGATTAGCACCA
CCAAGAAAGCTAGCGACTCTGCGTTTTGGCTCGAGGTTTCAGGTCATTCAATGACTGCCCCGCAAGGTGTGAAGCCAAGT
TTCCCTGAGGGCATGCTTATACTTGTTGATCCTCAAGAAAATGTTAAATATGGCGATTTCTGTGTTGCAGGGACTCATAA
CGATACTGAGGTCACTTTCAAGAAGTTTGTTTGGGATGATGGCTATCGTTGGCTTGAGCCACTAAATAATAATCCTCGAT
ATCAAAGCATATTGTTTGATGATAACTGCCGGATCATAGGGAAGGTAGTTAAGGCTCAGTGGCCCGAAGAGACATTCAGC
TAA

Upstream 100 bases:

>100_bases
ACACTCCATTTTTGTATCAAACAAAGAATACTACAGGTATTTATTATATTCAATACCTCAGATATTTCGCGTTAAATACT
ATCGCTATTAGAATGAGGTC

Downstream 100 bases:

>100_bases
CCCACTGCTAGCCCTGCAGTGATACGGGGTTAGCGCGTGTGCCACCATGAAAGGCCCATAACAATAAGTAGCCCTATATT
AATACCAATAAGATATGAGT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: ORF-96 protein [H]

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MEKRKELTTEQLEDAKRLKALYESKKKTLGITQYTIADDLGISQGAVGHYLNGRNALNAPIASVFAKALQVSISDFSPSI
AREVSGYAASNTEDPQRPVILAYTYPLFSTVQAGAFAAVGSYTEKDAKDWISTTKKASDSAFWLEVSGHSMTAPQGVKPS
FPEGMLILVDPQENVKYGDFCVAGTHNDTEVTFKKFVWDDGYRWLEPLNNNPRYQSILFDDNCRIIGKVVKAQWPEETFS

Sequences:

>Translated_240_residues
MEKRKELTTEQLEDAKRLKALYESKKKTLGITQYTIADDLGISQGAVGHYLNGRNALNAPIASVFAKALQVSISDFSPSI
AREVSGYAASNTEDPQRPVILAYTYPLFSTVQAGAFAAVGSYTEKDAKDWISTTKKASDSAFWLEVSGHSMTAPQGVKPS
FPEGMLILVDPQENVKYGDFCVAGTHNDTEVTFKKFVWDDGYRWLEPLNNNPRYQSILFDDNCRIIGKVVKAQWPEETFS
>Mature_240_residues
MEKRKELTTEQLEDAKRLKALYESKKKTLGITQYTIADDLGISQGAVGHYLNGRNALNAPIASVFAKALQVSISDFSPSI
AREVSGYAASNTEDPQRPVILAYTYPLFSTVQAGAFAAVGSYTEKDAKDWISTTKKASDSAFWLEVSGHSMTAPQGVKPS
FPEGMLILVDPQENVKYGDFCVAGTHNDTEVTFKKFVWDDGYRWLEPLNNNPRYQSILFDDNCRIIGKVVKAQWPEETFS

Specific function: May control the expression of the integrase and inhibit excision of the mobile element R391, and regulate the expression of other genes as well [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 26649; Mature: 26649

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKRKELTTEQLEDAKRLKALYESKKKTLGITQYTIADDLGISQGAVGHYLNGRNALNAP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCH
IASVFAKALQVSISDFSPSIAREVSGYAASNTEDPQRPVILAYTYPLFSTVQAGAFAAVG
HHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCHHHHHHHCHHHHHC
SYTEKDAKDWISTTKKASDSAFWLEVSGHSMTAPQGVKPSFPEGMLILVDPQENVKYGDF
CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCE
CVAGTHNDTEVTFKKFVWDDGYRWLEPLNNNPRYQSILFDDNCRIIGKVVKAQWPEETFS
EEECCCCCCCEEEEEEECCCCCHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCCCHHCCC
>Mature Secondary Structure
MEKRKELTTEQLEDAKRLKALYESKKKTLGITQYTIADDLGISQGAVGHYLNGRNALNAP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCH
IASVFAKALQVSISDFSPSIAREVSGYAASNTEDPQRPVILAYTYPLFSTVQAGAFAAVG
HHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCHHHHHHHCHHHHHC
SYTEKDAKDWISTTKKASDSAFWLEVSGHSMTAPQGVKPSFPEGMLILVDPQENVKYGDF
CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCE
CVAGTHNDTEVTFKKFVWDDGYRWLEPLNNNPRYQSILFDDNCRIIGKVVKAQWPEETFS
EEECCCCCCCEEEEEEECCCCCHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157923; 12193633 [H]