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The map label for this gene is ycfD [H]

Identifier: 170025286

GI number: 170025286

Start: 3371007

End: 3372128

Strand: Reverse

Name: ycfD [H]

Synonym: YPK_3067

Alternate gene names: 170025286

Gene position: 3372128-3371007 (Counterclockwise)

Preceding gene: 170025287

Following gene: 170025283

Centisome position: 71.91

GC content: 52.76

Gene sequence:

>1122_bases
ATGGCTTATCAACTAAACCTCAACTGGCCCGAATTTTTAGAAAAATACTGGCAAAAACAACCTGTTGTATTAAAGAATGC
CTTCCCAAACTTCATCGATCCTATTACGCCGGACGAACTGGCTGGTTTGGCGATGGAAGTGGAGGTCGATAGCCGTTTGG
TCAGTCATACCAATGGCCGGTGGCAGGCCAGTAACGGGCCGTTTGAGCACTTTGATAATCTGGGTGAAACCGGCTGGTCG
CTGCTGGCACAGGCGGTTAACCACTGGCATGCCCCGTCAGCCGAACTGGTCCGTCCGTTTCGCGTGTTACCGGATTGGCG
CTTAGACGATCTGATGATCTCTTTTTCCGTACCGGGCGGTGGCGTCGGGCCGCATATTGATCAATACGATGTATTCATCA
TTCAGGGGATGGGCCGCCGCCGCTGGCGTGTTGGTGATAAACTGCCGTTGAAGCAGTTTTGTCCGCATCCGGCGCTGCTG
CACGTAGAGCCTTTTACCCCCATCATTGATGAAGATTTAGCGCCGGGCGACATTTTATATATTCCGCCGGGCTTCCCGCA
TGACGGTATCACTCACGAAACGGCGTTCAACTACTCCGTCGGTTTTCGTGGGCCAAATGGCCGGGATTTAATCAGCAGCT
TCGCTGACTATGTGCTGGAAAACGATCTCGGTGGCGAGCACTACAGCGATCCTGATTTAACGTGTCGGGAGCATCCGGGG
CGGGTTGAAGATCATGAGTTGGAGCGCCTGCGCGGGATGATGCTCAGCATGATTAATCAGCCGGAAGATTTTAAACAGTG
GTTTGGCCGCTTCGTGACGACACCACGCCATGAACTGGATATCGCCCCCGCACAGCCGCCCTATGATCAGGATGAGATTG
TTGATGCCCTGATGGAGGGCGCTGTATTGACGCGCTTAGGTGGGTTGCGAGTTCTGCGTGTTGGCGACAACGTTTTCATT
AACAGCGAACGGTTGGAAATGGCCAATGCTGAAGCCGCTGATGCTCTGTGCCGTTACACCATCATTGGCAAAAAAGAGTT
GGGCGAGGCACTACAGGACCCGGCTTTCGTCACGGAATTAACCGAATTGATTAATCAGGGCTATTGGTTCTTCAACGAAT
AA

Upstream 100 bases:

>100_bases
TTTTACATAACTGAACGCACAGCCTTGACCAATGACAAGGCGGGTCGGGGGTTAGCCACTTTATAATCAGGTTCATTTAT
TTTCTCTCTGGTGTGAAAGT

Downstream 100 bases:

>100_bases
TAGCGCTATATACCCTAAATAATGGGTAACAGGTTGTGTAATCCCTGCATTAATTCATCGGCATGCTCAAAGCTGATCGC
TTTCGGTACATCGACCAGCG

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MAYQLNLNWPEFLEKYWQKQPVVLKNAFPNFIDPITPDELAGLAMEVEVDSRLVSHTNGRWQASNGPFEHFDNLGETGWS
LLAQAVNHWHAPSAELVRPFRVLPDWRLDDLMISFSVPGGGVGPHIDQYDVFIIQGMGRRRWRVGDKLPLKQFCPHPALL
HVEPFTPIIDEDLAPGDILYIPPGFPHDGITHETAFNYSVGFRGPNGRDLISSFADYVLENDLGGEHYSDPDLTCREHPG
RVEDHELERLRGMMLSMINQPEDFKQWFGRFVTTPRHELDIAPAQPPYDQDEIVDALMEGAVLTRLGGLRVLRVGDNVFI
NSERLEMANAEAADALCRYTIIGKKELGEALQDPAFVTELTELINQGYWFFNE

Sequences:

>Translated_373_residues
MAYQLNLNWPEFLEKYWQKQPVVLKNAFPNFIDPITPDELAGLAMEVEVDSRLVSHTNGRWQASNGPFEHFDNLGETGWS
LLAQAVNHWHAPSAELVRPFRVLPDWRLDDLMISFSVPGGGVGPHIDQYDVFIIQGMGRRRWRVGDKLPLKQFCPHPALL
HVEPFTPIIDEDLAPGDILYIPPGFPHDGITHETAFNYSVGFRGPNGRDLISSFADYVLENDLGGEHYSDPDLTCREHPG
RVEDHELERLRGMMLSMINQPEDFKQWFGRFVTTPRHELDIAPAQPPYDQDEIVDALMEGAVLTRLGGLRVLRVGDNVFI
NSERLEMANAEAADALCRYTIIGKKELGEALQDPAFVTELTELINQGYWFFNE
>Mature_372_residues
AYQLNLNWPEFLEKYWQKQPVVLKNAFPNFIDPITPDELAGLAMEVEVDSRLVSHTNGRWQASNGPFEHFDNLGETGWSL
LAQAVNHWHAPSAELVRPFRVLPDWRLDDLMISFSVPGGGVGPHIDQYDVFIIQGMGRRRWRVGDKLPLKQFCPHPALLH
VEPFTPIIDEDLAPGDILYIPPGFPHDGITHETAFNYSVGFRGPNGRDLISSFADYVLENDLGGEHYSDPDLTCREHPGR
VEDHELERLRGMMLSMINQPEDFKQWFGRFVTTPRHELDIAPAQPPYDQDEIVDALMEGAVLTRLGGLRVLRVGDNVFIN
SERLEMANAEAADALCRYTIIGKKELGEALQDPAFVTELTELINQGYWFFNE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=371, Percent_Identity=67.6549865229111, Blast_Score=535, Evalue=1e-153,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42375; Mature: 42244

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQLNLNWPEFLEKYWQKQPVVLKNAFPNFIDPITPDELAGLAMEVEVDSRLVSHTNGR
CEEEECCCCHHHHHHHHCCCCEEEHHCCCHHCCCCCHHHHHCEEEEEEHHHHHHHCCCCC
WQASNGPFEHFDNLGETGWSLLAQAVNHWHAPSAELVRPFRVLPDWRLDDLMISFSVPGG
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCC
GVGPHIDQYDVFIIQGMGRRRWRVGDKLPLKQFCPHPALLHVEPFTPIIDEDLAPGDILY
CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCHHCCCCCCCCEEE
IPPGFPHDGITHETAFNYSVGFRGPNGRDLISSFADYVLENDLGGEHYSDPDLTCREHPG
ECCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
RVEDHELERLRGMMLSMINQPEDFKQWFGRFVTTPRHELDIAPAQPPYDQDEIVDALMEG
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHEECCCCCCCCCHHHHHHHHHHH
AVLTRLGGLRVLRVGDNVFINSERLEMANAEAADALCRYTIIGKKELGEALQDPAFVTEL
HHHHHHCCEEEEEECCCEEECHHHHHHCCCHHHHHHHHHHEECHHHHHHHHHCCHHHHHH
TELINQGYWFFNE
HHHHHCCCEEECC
>Mature Secondary Structure 
AYQLNLNWPEFLEKYWQKQPVVLKNAFPNFIDPITPDELAGLAMEVEVDSRLVSHTNGR
EEEECCCCHHHHHHHHCCCCEEEHHCCCHHCCCCCHHHHHCEEEEEEHHHHHHHCCCCC
WQASNGPFEHFDNLGETGWSLLAQAVNHWHAPSAELVRPFRVLPDWRLDDLMISFSVPGG
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCC
GVGPHIDQYDVFIIQGMGRRRWRVGDKLPLKQFCPHPALLHVEPFTPIIDEDLAPGDILY
CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCHHCCCCCCCCEEE
IPPGFPHDGITHETAFNYSVGFRGPNGRDLISSFADYVLENDLGGEHYSDPDLTCREHPG
ECCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
RVEDHELERLRGMMLSMINQPEDFKQWFGRFVTTPRHELDIAPAQPPYDQDEIVDALMEG
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHEECCCCCCCCCHHHHHHHHHHH
AVLTRLGGLRVLRVGDNVFINSERLEMANAEAADALCRYTIIGKKELGEALQDPAFVTEL
HHHHHHCCEEEEEECCCEEECHHHHHHCCCHHHHHHHHHHEECHHHHHHHHHCCHHHHHH
TELINQGYWFFNE
HHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]